View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_high_5 (Length: 705)

Name: NF3943_high_5
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_high_5
NF3943_high_5
[»] chr4 (1 HSPs)
chr4 (1-691)||(44040870-44041552)


Alignment Details
Target: chr4 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Complemental strand, 44041552 - 44040870
Alignment:
Q  1 agtttgcataagaacctctaaacatggttgtttatttatattttagtactatcaacacattatctaacacat--tttccaacacacctatttacctgaag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  44041552 agtttgcataagaacctctaaacatggttgtttatttatattttagtactatcaacacattatctaacacatattttccaacacacctatttacctgaag 44041453  T
Q  99 atgactgctagaacaaaagtgatcgccggagtcaagttgctcatagcagatccaagggtgggagagctgtagcttatgccagtgaatacacaattctgca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44041452 atgactgctagaacaaaagtgatcgccggagtcaagttgctcatagcagatccaagggtgggagagctgtagcttatgccagtgaatacacaattctgca 44041353  T
Q  199 tgatagttatgctgcaaatttccaatgatcatgaatcatgattcctcatttctatttagtaattatctcataaagggatagaaaatagacacaatcaaga 298  Q
    ||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44041352 tgatagttatgctgcaaatttccaatgatcatga-------ttcttcatttctatttagtaattatctcataaagggatagaaaatagacacaatcaaga 44041260  T
Q  299 ttttaaaaacaatcagccaccacagttgtggctgcaattataaactcttttagttccagtatcagtcgaattcatgcaatcgccatttgaaaccttaaat 398  Q
    |||||||||||||||||||||||||||||||| ||||||| |   |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  44041259 ttttaaaaacaatcagccaccacagttgtggccgcaattaaa---tcttttagttccagtatcagtcgaatccatgcaatcgccatttaaaaccttaaat 44041163  T
Q  399 aatcagccaccacagttgtggccgccacgctattacaaagccttttatgtttgagtatcagtcaaatcatgcgatcacgatttgaaaccttaaataatac 498  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44041162 aatcagccaccacagttgtggccgctaagctgttacaaagccttttatgtttgagtatcagtcaaatcatgcgatcacgatttgaaaccttaaataatac 44041063  T
Q  499 gactaatgtaatgcaattacacacatacccgacaaggccgaggaagaagaatttggtaagaagtgagaaagaaaggggtggtcttgttgtcctgttgatg 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44041062 gactaatgtaatgcaattacacacatacccgacaaggccgaggaagaaaaatttggcaagaagtgagaaagaaaggggtggtcttgttgtcctgttgatg 44040963  T
Q  599 aggaaataggaagggaggagaatgaaagtggcaagagcattggaatagagaacaaagatgaagtggttcattccttttgtggacatggcttct 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44040962 aggaaataggaagggaggagaatgaaagtggcaagagcattggaatagagaacaaagatgaagtggttcattccttttgtggacatggcttct 44040870  T

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