View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_50 (Length: 273)
Name: NF3943_high_50
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_50 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 27429644 - 27429390
Alignment:
| Q |
19 |
tgtgacataatttatcaataacaaaaaatgtgtcatatatagtgattttgcttgtgtttgtgatggaaaaataatatcttctttaagataaaagcaaagt |
118 |
Q |
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| T |
27429644 |
tgtgacataatttatcaataacaaaaaatgtgtcatatatagtgattttgcttgtgtttgtgatggaaaaataatgtcttctttaagataaaagcaaagt |
27429545 |
T |
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| Q |
119 |
gtagttgcgaataataaaagcaacgtgcagagtgattatgtagtattatacttgtaccatatgagaacaacatgagtcactgtatgagataaggttataa |
218 |
Q |
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| T |
27429544 |
gtagttgcgaataataaaagcaacgtgcagagtgattatgtggtattatacttgtaccatatgagaacaacatgagtcactgtatgagataaggttataa |
27429445 |
T |
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| Q |
219 |
gtgtataggttcagtgtttcattgcatgaaataacaaaggtgtctgtattaatgt |
273 |
Q |
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| T |
27429444 |
gtgtataggttcagtgtttcattgcatgaaataacaagggtgtctgtattaatgt |
27429390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 27446841 - 27446785
Alignment:
| Q |
97 |
ttctttaagataaaagcaaagtgta--gttgcgaataataaaagcaacgtgcagagt |
151 |
Q |
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| T |
27446841 |
ttctttaaaataaaagcaatgtgtatagttgtgaataataaaagcaacgtgcagagt |
27446785 |
T |
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