View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_high_55 (Length: 264)

Name: NF3943_high_55
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_high_55
NF3943_high_55
[»] chr4 (12 HSPs)
chr4 (1-228)||(50250605-50250832)
chr4 (156-228)||(50669237-50669309)
chr4 (166-207)||(48852849-48852890)
chr4 (163-207)||(48903120-48903164)
chr4 (156-207)||(48705237-48705288)
chr4 (156-194)||(7773696-7773734)
chr4 (172-226)||(49040984-49041038)
chr4 (156-193)||(7771553-7771590)
chr4 (156-193)||(7790238-7790275)
chr4 (163-196)||(48898893-48898926)
chr4 (163-196)||(49044055-49044088)
chr4 (172-228)||(48863421-48863477)
[»] chr6 (2 HSPs)
chr6 (156-228)||(21979465-21979537)
chr6 (166-208)||(21015992-21016034)
[»] chr8 (3 HSPs)
chr8 (164-201)||(12195484-12195521)
chr8 (164-201)||(12439912-12439949)
chr8 (162-196)||(15349038-15349072)
[»] chr1 (1 HSPs)
chr1 (163-228)||(24367327-24367392)
[»] chr7 (1 HSPs)
chr7 (156-207)||(48883984-48884036)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 50250832 - 50250605
Alignment:
Q  1 tatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagnnnnnnncattgagaaataatatctggaaacaaattgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  50250832 tatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagtttttttcattgagaaataatatctggaaacaaattgaaa 50250733  T
Q  101 ttgagggtacacacttagcttatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggctattcattggttggcttttcctta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50250732 ttgagggtacacacttagcttatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggctattcattggttggcttttcgtta 50250633  T
Q  201 tgatttattggtctatgttattgttgcc 228  Q
    ||||||||||||||||||||||||||||    
T  50250632 tgatttattggtctatgttattgttgcc 50250605  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 50669237 - 50669309
Alignment:
Q  156 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 228  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||  ||| | ||| |||||||||    
T  50669237 aggggttctctttaatgaggctatttattggttggcttttcgttatgatttaaaggtgtttgtcattgttgcc 50669309  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 48852849 - 48852890
Alignment:
Q  166 tttaatggggctattcattggttggcttttccttatgattta 207  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  48852849 tttaatggggctattcattggttggcttttcgtcatgattta 48852890  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 48903120 - 48903164
Alignment:
Q  163 ctctttaatggggctattcattggttggcttttccttatgattta 207  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  48903120 ctctttaatggggctattcattagttggcttttcatcatgattta 48903164  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 48705288 - 48705237
Alignment:
Q  156 aggggttctctttaatggggctattcattggttggcttttccttatgattta 207  Q
    |||||| |||| |||||||||||||||||||||||||| || | ||||||||    
T  48705288 aggggtgctctataatggggctattcattggttggcttatcgtcatgattta 48705237  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 7773734 - 7773696
Alignment:
Q  156 aggggttctctttaatggggctattcattggttggcttt 194  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  7773734 agggtttctatttaatggggctattcattggttggcttt 7773696  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 49041038 - 49040984
Alignment:
Q  172 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttg 226  Q
    ||||||||||||||||||||||||| | ||||| |||  || |||||||||||||    
T  49041038 ggggctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttg 49040984  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 7771553 - 7771590
Alignment:
Q  156 aggggttctctttaatggggctattcattggttggctt 193  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771553 agggtttctatttaatggggctattcattggttggctt 7771590  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 7790238 - 7790275
Alignment:
Q  156 aggggttctctttaatggggctattcattggttggctt 193  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7790238 agggtttctatttaatggggctattcattggttggctt 7790275  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 48898893 - 48898926
Alignment:
Q  163 ctctttaatggggctattcattggttggcttttc 196  Q
    |||| |||||||||||||||||||||||||||||    
T  48898893 ctctataatggggctattcattggttggcttttc 48898926  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 49044088 - 49044055
Alignment:
Q  163 ctctttaatggggctattcattggttggcttttc 196  Q
    |||||||||||||||||||| |||||||||||||    
T  49044088 ctctttaatggggctattcactggttggcttttc 49044055  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 48863421 - 48863477
Alignment:
Q  172 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 228  Q
    ||||||||||||||||||||||||| | ||||| ||   || |||||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcc 48863477  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 21979537 - 21979465
Alignment:
Q  156 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 228  Q
    ||||||| |||||||| ||||||||||||||||| ||||||  ||||||||||  || | |||||||||||||    
T  21979537 aggggttttctttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcc 21979465  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 21015992 - 21016034
Alignment:
Q  166 tttaatggggctattcattggttggcttttccttatgatttat 208  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  21015992 tttaatggggctattcattggttggcttttcgtcatgatttat 21016034  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 12195484 - 12195521
Alignment:
Q  164 tctttaatggggctattcattggttggcttttccttat 201  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12195484 tctttaatggggctattcattggttggcttctccttat 12195521  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 12439912 - 12439949
Alignment:
Q  164 tctttaatggggctattcattggttggcttttccttat 201  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12439912 tctttaatggggctattcattggttggcttctccttat 12439949  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 15349038 - 15349072
Alignment:
Q  162 tctctttaatggggctattcattggttggcttttc 196  Q
    ||||| |||||||||||||||||||||||||||||    
T  15349038 tctctataatggggctattcattggttggcttttc 15349072  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 24367327 - 24367392
Alignment:
Q  163 ctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 228  Q
    |||||| ||||||||||||| |||||| |||||| ||||||| ||   ||| ||||||||||||||    
T  24367327 ctctttcatggggctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgcc 24367392  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 48883984 - 48884036
Alignment:
Q  156 aggggttctctttaatggggctattcattggttgg-cttttccttatgattta 207  Q
    |||| ||| ||||||||||||||||||||||||||  ||||| ||||||||||    
T  48883984 agggtttccctttaatggggctattcattggttggttttttcgttatgattta 48884036  T

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