View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_58 (Length: 250)
Name: NF3943_high_58
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 47038482 - 47038241
Alignment:
| Q |
9 |
agcagagataagagaaccaaataaaagatcaagaatatggttaggttcttacatcactccggtagctgctgctcgtgcctacgacaccgccgtattctat |
108 |
Q |
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| T |
47038482 |
agcagaaataagagaaccaaataaaagatcaagaatatggttaggttcttacatcactccggtagctgctgctcgtgcctacgacaccgccgtattctat |
47038383 |
T |
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| Q |
109 |
ttaagaggtcctacggctcgtcttaatttccccgaattattgctcgaagacgacgaagaaaacaacgacggttctattcagcaaggtaacatgtctgctg |
208 |
Q |
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| T |
47038382 |
ttaagaggtcctacggctcgtcttaatttccccgaattattgctcgaagacgacgaagaaaacaaggacggttctattcagcaaggtaacatgtctgctg |
47038283 |
T |
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| Q |
209 |
atttaatacgcaaaaaagctaccaaagtcggtgctagagttg |
250 |
Q |
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| T |
47038282 |
atttaatacgcaaaaaagctaccaaagtcggtgctagagttg |
47038241 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 5681526 - 5681578
Alignment:
| Q |
10 |
gcagagataagagaaccaaataaaagatcaagaatatggttaggttcttacat |
62 |
Q |
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| T |
5681526 |
gcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacat |
5681578 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 24174050 - 24174098
Alignment:
| Q |
11 |
cagagataagagaaccaaataaaagatcaagaatatggttaggttctta |
59 |
Q |
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| T |
24174050 |
cagaaataagagcaccaaatcaaaaaacaagaatatggttaggttctta |
24174098 |
T |
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