View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_62 (Length: 242)
Name: NF3943_high_62
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_62 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 30809148 - 30809356
Alignment:
| Q |
18 |
catcaaaccatcttgtatactatgtcatcgaacactgcggcgcgcgtggcggtggtcttgttatggacgaaaaaataaggtgtttgctgattattcttca |
117 |
Q |
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| T |
30809148 |
catcaaaccatcttgtatactatgtcatcgaacgctgcggcgcgcatggcggtggtcttgttatggacgaaaaaataaggtgtttgctgattattcttca |
30809247 |
T |
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| Q |
118 |
ttttctgatagtgattcagatatcacttaagctaaggttacaactaatttacttatttttgtttctgaagacaaaattgatagagttttttcattacttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
30809248 |
ttttctgatagtgattcagatatcacttaagctaaggttacaactaatttacttatttttatttctgaagacaaaattgat--agttttttcattacttg |
30809345 |
T |
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| Q |
218 |
ttaagtataat |
228 |
Q |
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||||||||||| |
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| T |
30809346 |
ttaagtataat |
30809356 |
T |
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