View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_69 (Length: 228)
Name: NF3943_high_69
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_69 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 34946972 - 34947178
Alignment:
| Q |
2 |
gcagtccgatttggatcggtttaagagtaaaagtcatccgatctaaagatcaaattatatgcagttcatgtcggttttggatgattaattttnnnnnnnc |
101 |
Q |
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| T |
34946972 |
gcagtccgatttgaatcggtttaagagtaaaagtcatccgatctaaagatcaaattatatgcggttcatgtcggttttggatgattaattttaataaaac |
34947071 |
T |
|
| Q |
102 |
cgatctgaaagtttctaagcacaaccactctttttctgacattaaatatttgataaaataaaatatgatcgttgaacgttaagtccatttctaactttta |
201 |
Q |
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| T |
34947072 |
cgatctgaaagtttctaagcacaaccactctttttctgacattaaatatttgataaaataaaatatgatcgttgaacgttaagtccatttctaactttta |
34947171 |
T |
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| Q |
202 |
tgattag |
208 |
Q |
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||||||| |
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| T |
34947172 |
tgattag |
34947178 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 41580494 - 41580431
Alignment:
| Q |
30 |
aaaagtcatccgatctaaagatcaaattatatgcagttcatgtcggttttggatgattaatttt |
93 |
Q |
| |
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|||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
41580494 |
aaaactcatccgatccaaagataaaattatatgcagttcggttcggttttggatgattaatttt |
41580431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 36069846 - 36069798
Alignment:
| Q |
45 |
taaagatcaaattatatgcagttcatgtcggttttggatgattaatttt |
93 |
Q |
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| T |
36069846 |
taaagataaaattatatgcagttcatattggttttggatgactaatttt |
36069798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 1274086 - 1274138
Alignment:
| Q |
41 |
gatctaaagatcaaattatatgcagttcatgtcggttttggatgattaatttt |
93 |
Q |
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||||||||||| ||||||||||| ||||| | |||||| ||||||||||||| |
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| T |
1274086 |
gatctaaagataaaattatatgcggttcagtttggttttagatgattaatttt |
1274138 |
T |
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