View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_high_7 (Length: 520)

Name: NF3943_high_7
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_high_7
NF3943_high_7
[»] chr5 (4 HSPs)
chr5 (245-511)||(36647883-36648145)
chr5 (18-193)||(36647656-36647831)
chr5 (321-463)||(501099-501242)
chr5 (90-193)||(36648339-36648444)
[»] chr8 (33 HSPs)
chr8 (303-464)||(16250392-16250552)
chr8 (248-428)||(20540820-20540999)
chr8 (321-463)||(10894546-10894688)
chr8 (275-449)||(15605954-15606128)
chr8 (275-449)||(15614307-15614481)
chr8 (263-449)||(15637661-15637848)
chr8 (318-448)||(15648124-15648254)
chr8 (275-448)||(15624336-15624509)
chr8 (275-449)||(15637111-15637285)
chr8 (275-436)||(15647953-15648114)
chr8 (275-410)||(15605628-15605763)
chr8 (275-436)||(15624165-15624326)
chr8 (276-449)||(15637294-15637467)
chr8 (276-449)||(15614125-15614297)
chr8 (275-410)||(15613981-15614116)
chr8 (269-436)||(15636942-15637108)
chr8 (276-449)||(15605772-15605944)
chr8 (318-449)||(15637477-15637609)
chr8 (318-436)||(15613808-15613927)
chr8 (399-463)||(4930230-4930294)
chr8 (318-436)||(15605455-15605574)
chr8 (370-448)||(15624519-15624597)
chr8 (370-448)||(15648307-15648385)
chr8 (368-449)||(15613461-15613541)
chr8 (368-449)||(15923603-15923684)
chr8 (368-449)||(15605109-15605188)
chr8 (306-462)||(25113374-25113530)
chr8 (276-376)||(15605343-15605443)
chr8 (318-386)||(38050224-38050292)
chr8 (276-376)||(15923839-15923939)
chr8 (389-440)||(18666868-18666919)
chr8 (398-436)||(15923951-15923989)
chr8 (276-340)||(15613732-15613796)
[»] scaffold0114 (1 HSPs)
scaffold0114 (321-463)||(34269-34411)
[»] chr6 (10 HSPs)
chr6 (318-457)||(33452304-33452443)
chr6 (318-440)||(21992608-21992730)
chr6 (318-457)||(13705479-13705616)
chr6 (254-389)||(15654020-15654155)
chr6 (254-389)||(15663973-15664108)
chr6 (398-462)||(15654198-15654262)
chr6 (398-462)||(15664147-15664211)
chr6 (398-458)||(30890037-30890097)
chr6 (318-432)||(27434710-27434823)
chr6 (322-386)||(11550248-11550312)
[»] chr3 (4 HSPs)
chr3 (303-464)||(5750578-5750741)
chr3 (303-464)||(5787537-5787700)
chr3 (318-440)||(30160475-30160597)
chr3 (322-440)||(20795347-20795465)
[»] scaffold0490 (1 HSPs)
scaffold0490 (311-440)||(9149-9278)
[»] chr1 (3 HSPs)
chr1 (322-438)||(19095360-19095476)
chr1 (254-334)||(43382212-43382292)
chr1 (389-440)||(45915036-45915087)
[»] chr4 (5 HSPs)
chr4 (311-463)||(17461900-17462052)
chr4 (318-457)||(37069667-37069804)
chr4 (399-463)||(13923266-13923330)
chr4 (318-432)||(18066734-18066847)
chr4 (248-296)||(12573831-12573879)
[»] chr2 (1 HSPs)
chr2 (263-411)||(11127715-11127864)
[»] scaffold0155 (1 HSPs)
scaffold0155 (303-440)||(26649-26786)
[»] chr7 (1 HSPs)
chr7 (318-440)||(7946482-7946604)
[»] scaffold0003 (1 HSPs)
scaffold0003 (318-432)||(52540-52653)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 245 - 511
Target Start/End: Original strand, 36647883 - 36648145
Alignment:
Q  245 tgaatctttatctttattataaacatttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttct 344  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36647883 tgaatctttatctttattataaatatttgttttcctttaaatcaaaagtacacgtgatatcttcacattttctatctcatttaatgttttcttatcttct 36647982  T
Q  345 aattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctc 444  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||    
T  36647983 aatcaaaatagattatgtcacgtttattttatatcaaccaataaaagaaggaccacggctcatttgttttacatgaaccaatcaaaatggatcatgactc 36648082  T
Q  445 atttgtaaattaatacatgannnnnnnccctacatatgtagacaaatcctttttcacattttcatct 511  Q
    ||||||||||||||||||||       |||    |||||||||||||||||||||||||||||||||    
T  36648083 atttgtaaattaatacatgatttttttccc----tatgtagacaaatcctttttcacattttcatct 36648145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 36647656 - 36647831
Alignment:
Q  18 aagtgttatactcaacaaatatttgatgaacattctttattattagactatgttttctacttacagtaatttgtttctttttcttgttttgattattgag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36647656 aagtgttatactcaacaaatatttgatgaacattctttattattagactatgttttctacttacggtaatttgtttctttttcttgttttgattattgag 36647755  T
Q  118 taagtgttttatataggtgatgtttatgagatgggttgatatgaatttgggattaaactaaacttgaatcgatcat 193  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36647756 taagtgttttatataggggatgtttatgagatgggttgatatgaatttgggattaaactaaacttgaatcgatcat 36647831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 321 - 463
Target Start/End: Original strand, 501099 - 501242
Alignment:
Q  321 tcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaa-gaaccatgactcatttgttttacatg 419  Q
    |||||||||  ||||||||| || ||| ||||| ||||||| ||| ||||||||||||||| | |||||| || | | ||||||||||||||||| ||||    
T  501099 tcatttaatactttcttatcatccaatcaaaattgattatgacacatttattttatatcaatcgataaaaaaaaggatcatgactcatttgtttttcatg 501198  T
Q  420 aaccaatcaaaatggatcatggctcatttgtaaattaatacatg 463  Q
    | ||||||||||| ||||||| ||||||||||||||||||||||    
T  501199 agccaatcaaaatagatcatgactcatttgtaaattaatacatg 501242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 36648339 - 36648444
Alignment:
Q  90 gtttctttttcttgttttgattattgagtaagtgtttt--atataggtgatgtttatgagatgggttgatatgaatttgggattaaactaaacttgaatc 187  Q
    ||||||||||| |||||| ||||||||| |||||||||  ||| ||| ||||||||||||||||||||||||||||||||||| ||||  ||| ||||||    
T  36648339 gtttctttttcgtgttttaattattgagcaagtgtttttaatacaggggatgtttatgagatgggttgatatgaatttgggataaaacataacatgaatc 36648438  T
Q  188 gatcat 193  Q
     |||||    
T  36648439 aatcat 36648444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 303 - 464
Target Start/End: Original strand, 16250392 - 16250552
Alignment:
Q  303 atcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatga 402  Q
    |||||||||||  ||||||||||||||||||||||||| || ||| ||||||||||||| ||| ||| |||||||||||||||| ||| ||| | |||||    
T  16250392 atcttcacattccctatctcatttaatgttttcttatcatccaatcaaaatagattatgacacatttgttttatatcaaccaatcaaaaaaggagcatga 16250491  T
Q  403 ctcatttgttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacatga 464  Q
    |||| || |||| ||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  16250492 ctca-ttatttttcatgagccaatcaaaatggatcatgacttatttgtaaattaatacatga 16250552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 248 - 428
Target Start/End: Complemental strand, 20540999 - 20540820
Alignment:
Q  248 atctttatctttattataaacatttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaat 347  Q
    |||| ||||| |||||||||||||| |||| ||| ||||||||||||||  | ||||||||| ||||  |||||||||||| ||||| ||||| || |||    
T  20540999 atctctatctctattataaacattt-tctttcttaaaatcaaaagtacatctgatatcttcatatttcttatctcatttaacgtttttttatcctccaat 20540901  T
Q  348 taaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatca 428  Q
     ||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||||||    
T  20540900 caaaatggattatgacacatttattttatatcaaccaataaaaaaagaatcataactcatttgtttttcatgagccaatca 20540820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 321 - 463
Target Start/End: Original strand, 10894546 - 10894688
Alignment:
Q  321 tcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatga 420  Q
    |||||||||||||||||||| || ||| ||||| ||||||| ||| |||||||||||||||||||||||| ||  |  || ||||||||||||| |||||    
T  10894546 tcatttaatgttttcttatcatccaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaatgattataactcatttgtttttcatga 10894645  T
Q  421 accaatcaaaatggatcatggctcatttgtaaattaatacatg 463  Q
     ||||||||||||||||||| |||| |||||||||||||||||    
T  10894646 gccaatcaaaatggatcatgactcaattgtaaattaatacatg 10894688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 449
Target Start/End: Complemental strand, 15606128 - 15605954
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttt 374  Q
    |||||||||||| |||| |||| || ||||||||| ||||   ||||||||||||||||||||||| || ||| | ||| |||| || ||| ||||||||    
T  15606128 cttccttcaaattaaaaatacatgtgatatcttcatatttctcatctcatttaatgttttcttatcatccaatcagaatggattttgacacatttatttt 15606029  T
Q  375 atatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    |||||||||||||||| ||  | ||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||    
T  15606028 atatcaaccaataaaaaaatgatcatgactcatttgtttttcatgagccaatcataatggatcatgactcatttg 15605954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 449
Target Start/End: Complemental strand, 15614481 - 15614307
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttt 374  Q
    |||||||||||| |||| |||| || ||||||||| ||||   ||||||||||||||||||||||| || ||| | ||| |||| || ||| ||||||||    
T  15614481 cttccttcaaattaaaaatacatgtgatatcttcatatttctcatctcatttaatgttttcttatcatccaatcagaatggattttgacacatttatttt 15614382  T
Q  375 atatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    |||||||||||||||| ||  | ||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||    
T  15614381 atatcaaccaataaaaaaatgatcatgactcatttgtttttcatgagccaatcataatggatcatgactcatttg 15614307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 263 - 449
Target Start/End: Complemental strand, 15637848 - 15637661
Alignment:
Q  263 ataaacatttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgt 362  Q
    ||||||||||  |||||||||||| ||||| |||||| ||||||||| ||||   ||||||||||||||||||||| | || ||| | |||  ||| ||     
T  15637848 ataaacatttaacttccttcaaattaaaagaacacgtgatatcttcatatttctcatctcatttaatgttttcttaacatccaatcagaatgaattttga 15637749  T
Q  363 cacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatgga-tcatggctcatttg 449  Q
    ||| |||||||||||||||||||||||| ||| | ||||||||||||||||| ||||| ||||||| |||||| ||||| ||||||||    
T  15637748 cacatttattttatatcaaccaataaaaaaaggatcatgactcatttgtttttcatgagccaatcataatggagtcatgactcatttg 15637661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 318 - 448
Target Start/End: Complemental strand, 15648254 - 15648124
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||| |||| ||||| || ||| ||||||||||||||||||||| || ||| | ||||||||||||||||| ||    
T  15648254 atctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttca 15648155  T
Q  418 tgaaccaatcaaaatggatcatggctcattt 448  Q
    ||| ||||||||||||||||||| |||||||    
T  15648154 tgagccaatcaaaatggatcatgactcattt 15648124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 448
Target Start/End: Complemental strand, 15624509 - 15624336
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttt 374  Q
    |||| ||||||| |||  ||||||| | ||||||| ||||   ||||||||||||||||||||||| || ||| |||| ||||| || ||| ||||||||    
T  15624509 cttctttcaaattaaatttacacgtgacatcttcatatttctcatctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttatttt 15624410  T
Q  375 atatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcattt 448  Q
    ||||||||||||| || ||| | ||||||||||||||||| ||| | ||||||||||||||||||| |||||||    
T  15624409 atatcaaccaatagaaaaaggatcatgactcatttgtttttcatcagccaatcaaaatggatcatgactcattt 15624336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 275 - 449
Target Start/End: Complemental strand, 15637285 - 15637111
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttt 374  Q
    |||||||||||| ||| ||||||||   ||||||| ||||   ||||||||||||||||||||||| |  ||| | ||| |||| || ||| ||||||||    
T  15637285 cttccttcaaattaaatgtacacgtgtcatcttcatatttctcatctcatttaatgttttcttatcattcaatcagaatggattttgacacatttatttt 15637186  T
Q  375 atatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    |||||||||||||||| ||  ||||||||||||||||||| ||||| ||||||| ||| ||||||| ||||||||    
T  15637185 atatcaaccaataaaaaaatgaccatgactcatttgtttttcatgagccaatcataatagatcatgactcatttg 15637111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 436
Target Start/End: Complemental strand, 15648114 - 15647953
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttt 374  Q
    |||||||||||| |||| |||||||   ||||||| ||||    |||||||||||||||||||||| || ||| ||||| |||| || ||||||||||||    
T  15648114 cttccttcaaattaaaattacacgtggcatcttcatatttgtcctctcatttaatgttttcttatcatccaatcaaaatggattttggcacgtttatttt 15648015  T
Q  375 atatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggat 436  Q
    ||||||||||||||||  || | |||||||||||||||||  |||| |||||||||||||||    
T  15648014 atatcaaccaataaaaataggatcatgactcatttgtttttaatgagccaatcaaaatggat 15647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 275 - 410
Target Start/End: Complemental strand, 15605763 - 15605628
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttt 374  Q
    |||||||||||| |||||||||||| ||||||||| ||||   ||||||||||||||||||||||| || ||| | ||| |||| || ||| ||||||||    
T  15605763 cttccttcaaattaaaagtacacgtgatatcttcatatttctcatctcatttaatgttttcttatcatccaatcagaatggattttgacacatttatttt 15605664  T
Q  375 atatcaaccaataaaagaagaaccatgactcatttg 410  Q
    |||||||||||||||| ||| | |||||||||||||    
T  15605663 atatcaaccaataaaaaaaggatcatgactcatttg 15605628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 275 - 436
Target Start/End: Complemental strand, 15624326 - 15624165
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttt 374  Q
    |||||||||||| |||| |||||||   ||||||| ||||    |||||||||||||||||||||| || ||| ||||| |||| || ||||||||||||    
T  15624326 cttccttcaaattaaaattacacgtggcatcttcatatttgtcctctcatttaatgttttcttatcatccaatcaaaatggattttgacacgtttatttt 15624227  T
Q  375 atatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggat 436  Q
    ||||||||||||||||  || | |||||||||||||||||  |||| ||||| |||||||||    
T  15624226 atatcaaccaataaaaataggatcatgactcatttgtttttaatgagccaattaaaatggat 15624165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 276 - 449
Target Start/End: Complemental strand, 15637467 - 15637294
Alignment:
Q  276 ttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttta 375  Q
    ||||||||||| ||| ||||| || | ||||| | ||||   |||||||||||||||||| |||| || ||| | ||| |||| || ||| |||||||||    
T  15637467 ttccttcaaattaaatgtacatgtgacatcttaatatttctcatctcatttaatgttttcctatcatccaatgacaatggattttgacacatttatttta 15637368  T
Q  376 tatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    ||||||||||||||| | | | ||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||    
T  15637367 tatcaaccaataaaaaatggatcatgactcatttgtttttcatgagccaatcataatggatcatgactcatttg 15637294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 449
Target Start/End: Complemental strand, 15614297 - 15614125
Alignment:
Q  276 ttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttta 375  Q
    ||||||||||| ||| |||||||| | ||||||| ||||   ||||||||||||||||| ||||| || ||| | ||| |||| || ||| |||||||||    
T  15614297 ttccttcaaattaaatgtacacgtgacatcttcatatttctcatctcatttaatgtttttttatcatccaatcagaatggattttgacacatttatttta 15614198  T
Q  376 tatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    ||||||||||||||| ||| | |||||| ||||||||||  |||| ||||||| ||| ||||||| ||||||||    
T  15614197 tatcaaccaataaaaaaag-atcatgacccatttgttttttatgagccaatcataatagatcatgactcatttg 15614125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 275 - 410
Target Start/End: Complemental strand, 15614116 - 15613981
Alignment:
Q  275 cttccttcaaatcaaaagtacacgttatatcttcacattttct-atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattt 373  Q
    |||||||||||| |||| ||||||| ||||||||| ||||| | ||||||||||||||||||||||| || ||| | ||| |||| || ||| |||||||    
T  15614116 cttccttcaaattaaaaatacacgtgatatcttcatattttttcatctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattt 15614017  T
Q  374 tatatcaaccaataaaagaagaaccatgactcatttg 410  Q
    ||||||||||||||||| ||| | |||||||||||||    
T  15614016 tatatcaaccaataaaa-aaggatcatgactcatttg 15613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 436
Target Start/End: Complemental strand, 15637108 - 15636942
Alignment:
Q  269 atttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtt 368  Q
    |||| ||||||||||||| ||| |||||||| | ||||||| ||||   |||||||||||| |||| ||||| || ||| | ||| |||| || ||| ||    
T  15637108 atttatcttccttcaaattaaatgtacacgtgacatcttcatatttctcatctcatttaat-ttttattatcatccaatcagaatggattttgacacatt 15637010  T
Q  369 tattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggat 436  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||  ||||  ||||||||||||||    
T  15637009 tattttatatcaaccaataaaaaaaggatcatgactcatttgtttttaatgagtcaatcaaaatggat 15636942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 276 - 449
Target Start/End: Complemental strand, 15605944 - 15605772
Alignment:
Q  276 ttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttta 375  Q
    ||||||||||| ||| |||||||| | ||||||| ||||   ||||||||||||||||| ||||| || ||| | ||| |||| || ||| |||||||||    
T  15605944 ttccttcaaattaaatgtacacgtgacatcttcatatttctcatctcatttaatgtttttttatcatccaatcagaatggattttgacacatttatttta 15605845  T
Q  376 tatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    ||||||||||||||| ||| | |||||| ||||||||||  |||| ||||| | ||| ||||||| ||||||||    
T  15605844 tatcaaccaataaaaaaag-atcatgacccatttgttttttatgagccaattataatagatcatgactcatttg 15605772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 449
Target Start/End: Complemental strand, 15637609 - 15637477
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    |||||||||||||||||| |||| || ||| | ||| |||| || ||| ||||||||||||||||||||||||  || | ||||||||||||||||| ||    
T  15637609 atctcatttaatgttttcctatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttca 15637510  T
Q  418 tgaaccaatcaaaatgga-tcatggctcatttg 449  Q
    ||| ||||||| |||||| ||||| ||||||||    
T  15637509 tgatccaatcataatggagtcatgactcatttg 15637477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 318 - 436
Target Start/End: Complemental strand, 15613927 - 15613808
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaat-aaaagaagaaccatgactcatttgttttac 416  Q
    ||||||||||||||||||||||| || |||   ||| |||| || ||| |||||||||||||||||||| |||| ||| | ||||||||||||||||| |    
T  15613927 atctcatttaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaagcatcatgactcatttgtttttc 15613828  T
Q  417 atgaaccaatcaaaatggat 436  Q
    |||| |||||||||||||||    
T  15613827 atgagccaatcaaaatggat 15613808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 4930230 - 4930294
Alignment:
Q  399 atgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacatg 463  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  4930230 atgactcatttgtttttcatgagccaatcaaaatggatcatgactcatttgtaaattaatacatg 4930294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 436
Target Start/End: Complemental strand, 15605574 - 15605455
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaaga-accatgactcatttgttttac 416  Q
    |||||| |||||||||||||||| || |||   ||| |||| || ||| |||||||||||||||||||||||| || | | ||||||||||||||||| |    
T  15605574 atctcaattaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaaacatcatgactcatttgtttttc 15605475  T
Q  417 atgaaccaatcaaaatggat 436  Q
    |||| |||||||||||||||    
T  15605474 atgagccaatcaaaatggat 15605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 448
Target Start/End: Complemental strand, 15624597 - 15624519
Alignment:
Q  370 attttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcattt 448  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||  |||| ||||||| ||||||||||| |||||||    
T  15624597 attttatatcaaccaataaaaaaaggatcatgactcatttgttttttatgagccaatcataatggatcatgactcattt 15624519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 448
Target Start/End: Complemental strand, 15648385 - 15648307
Alignment:
Q  370 attttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcattt 448  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||  |||| ||||||| ||||||||||| |||||||    
T  15648385 attttacatcaaccaataaaaaaaggaccatgactcatttgttttttatgagccaatcataatggatcatgactcattt 15648307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 15613541 - 15613461
Alignment:
Q  368 ttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    ||||||||||||||||||||||| |||| | ||||||||||| |||| ||||| ||||||||||||||||||| || |||||    
T  15613541 ttattttatatcaaccaataaaaaaagatc-atgactcatttttttttcatgagccaatcaaaatggatcatgacttatttg 15613461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 15923684 - 15923603
Alignment:
Q  368 ttattttatatcaaccaataaaagaagaaccatgactca-tttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    ||||||||||||||||||||||| ||| | ||||||||| ||| |||| ||||| ||||||||||||||||||| || |||||    
T  15923684 ttattttatatcaaccaataaaaaaag-atcatgactcattttttttttcatgagccaatcaaaatggatcatgacttatttg 15923603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 15605188 - 15605109
Alignment:
Q  368 ttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttg 449  Q
    ||||||||||||||||||||||| ||| | |||||||||||| ||||  |||| ||||||||||||||||||| || |||||    
T  15605188 ttattttatatcaaccaataaaaaaag-atcatgactcattt-ttttttatgagccaatcaaaatggatcatgacttatttg 15605109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 462
Target Start/End: Complemental strand, 25113530 - 25113374
Alignment:
Q  306 ttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaaga-accatgact 404  Q
    |||||||| ||  |||||||||||||||| ||||| || ||||||||||||||||| | |  ||| | ||| | ||||||| ||| || | | |||||||    
T  25113530 ttcacattgtccttctcatttaatgtttttttatcatccaattaaaatagattatgactcactta-tatattttaaccaatcaaaaaatagatcatgact 25113432  T
Q  405 catttgttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacat 462  Q
    ||||| |||| ||| | |||||||||||| |||||  |||| |||||||| |||||||    
T  25113431 catttatttttcattagccaatcaaaatgaatcataactcaattgtaaatcaatacat 25113374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 15605443 - 15605343
Alignment:
Q  276 ttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttta 375  Q
    ||||||||||| ||||||||| ||   ||||||| ||||   ||||||||||||||||||||||| || ||| ||||| |||| || ||| |||||||||    
T  15605443 ttccttcaaattaaaagtacatgtgccatcttcatatttctcatctcatttaatgttttcttatcatccaatcaaaatggattttgacacatttatttta 15605344  T
Q  376 t 376  Q
    |    
T  15605343 t 15605343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 38050292 - 38050224
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaat 386  Q
    |||||||||||| |||||||||| || ||| ||||| ||||||| ||| |||||||||||||| |||||    
T  38050292 atctcatttaatattttcttatcatccaatcaaaatggattatgacacatttattttatatcatccaat 38050224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 15923939 - 15923839
Alignment:
Q  276 ttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttatttta 375  Q
    ||||||||||| ||||||||| ||   ||||||| ||||   |||||||||||| |||||||||| || ||| |||| ||||| || ||| |||||||||    
T  15923939 ttccttcaaattaaaagtacatgtgccatcttcatatttatcatctcatttaatattttcttatcatccaatcaaaacagattttgacacatttatttta 15923840  T
Q  376 t 376  Q
    |    
T  15923839 t 15923839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 18666868 - 18666919
Alignment:
Q  389 aagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatg 440  Q
    |||| ||||||||||||||||  ||| ||| |||||||||||||||||||||    
T  18666868 aagatgaaccatgactcatttagttttcatcaaccaatcaaaatggatcatg 18666919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 15923989 - 15923951
Alignment:
Q  398 catgactcatttgttttacatgaaccaatcaaaatggat 436  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  15923989 catgactcatttgtttttcatgagccaatcaaaatggat 15923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 15613796 - 15613732
Alignment:
Q  276 ttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatc 340  Q
    ||||||||||| ||||||||| ||   ||||||| ||||   |||||||||||||||||||||||    
T  15613796 ttccttcaaattaaaagtacatgtgccatcttcatatttctcatctcatttaatgttttcttatc 15613732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 321 - 463
Target Start/End: Complemental strand, 34411 - 34269
Alignment:
Q  321 tcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatga 420  Q
    |||||||||| |||| |||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||| ||| |  ||||| |||||||||| |||||    
T  34411 tcatttaatgctttcatatcatctaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttcatga 34312  T
Q  421 accaatcaaaatggatcatggctcatttgtaaattaatacatg 463  Q
     ||||||||||||||| ||| ||||||||||||||||||||||    
T  34311 gccaatcaaaatggattatgactcatttgtaaattaatacatg 34269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 33452443 - 33452304
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||| |||||  ||||||  || |||||||||||||||||||||||| ||| |  ||||| |||||||||| ||    
T  33452443 atctcatttaatgttttcttatcatccaatcaaaatgaattatgaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttca 33452344  T
Q  418 tgaaccaatcaaaatggatcatggctcatttgtaaattaa 457  Q
    ||| ||||||||||||||||||| ||||||||||||||||    
T  33452343 tgagccaatcaaaatggatcatgactcatttgtaaattaa 33452304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 318 - 440
Target Start/End: Complemental strand, 21992730 - 21992608
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||| ||||| ||||||| ||| |||||||||||||||||||| |||  || | ||||||||||||||||| |     
T  21992730 atctcatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaatcaaaagaggatcatgactcatttgtttttct 21992631  T
Q  418 tgaaccaatcaaaatggatcatg 440  Q
    ||| |||||||||||||||||||    
T  21992630 tgagccaatcaaaatggatcatg 21992608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 13705616 - 13705479
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||| |||||  |||  |  || |||||||||||||||||||||||| ||| |  ||||| |||||||||| ||    
T  13705616 atctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttca 13705519  T
Q  418 tgaaccaatcaaaatggatcatggctcatttgtaaattaa 457  Q
    ||| ||||||||||||||||||| ||||||||||||||||    
T  13705518 tgagccaatcaaaatggatcatgactcatttgtaaattaa 13705479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 389
Target Start/End: Original strand, 15654020 - 15654155
Alignment:
Q  254 atctttattataaacatttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaat 353  Q
    |||| ||||||||||||||  |||||||||||| |||||||||| | | ||||||| ||||   ||||||||||||  ||||||||| || ||| |||||    
T  15654020 atctctattataaacattttccttccttcaaattaaaagtacacatgacatcttcatatttatcatctcatttaatactttcttatcatccaatcaaaat 15654119  T
Q  354 agattatgtcacgtttattttatatcaaccaataaa 389  Q
     ||||||| ||| |||||||||||||||||||||||    
T  15654120 ggattatgacacatttattttatatcaaccaataaa 15654155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 254 - 389
Target Start/End: Original strand, 15663973 - 15664108
Alignment:
Q  254 atctttattataaacatttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaat 353  Q
    |||| ||||||||||||||   ||||||||||| |||||||||| | | ||||||| ||||   ||||||||||||  ||||||||| || ||| |||||    
T  15663973 atctctattataaacattttcattccttcaaattaaaagtacacatgacatcttcatatttatcatctcatttaatactttcttatcatccaatcaaaat 15664072  T
Q  354 agattatgtcacgtttattttatatcaaccaataaa 389  Q
     ||||||| ||| |||||||||||||||||||||||    
T  15664073 ggattatgacacatttattttatatcaaccaataaa 15664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 15654198 - 15654262
Alignment:
Q  398 catgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacat 462  Q
    ||||||||||||||||| ||||  |||||||||||| | |||| |||||||||||||||||||||    
T  15654198 catgactcatttgtttttcatgttccaatcaaaatgaaacatgactcatttgtaaattaatacat 15654262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 15664147 - 15664211
Alignment:
Q  398 catgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacat 462  Q
    ||||||||||||||||| ||||  |||||||||||| | |||| |||||||||||||||||||||    
T  15664147 catgactcatttgtttttcatgttccaatcaaaatgaaacatgactcatttgtaaattaatacat 15664211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 30890097 - 30890037
Alignment:
Q  398 catgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaat 458  Q
    |||||||||||| |||||||||| ||||||||||| ||||||| ||||||| | |||||||    
T  30890097 catgactcatttattttacatgatccaatcaaaattgatcatgactcatttcttaattaat 30890037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 432
Target Start/End: Original strand, 27434710 - 27434823
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||||||| |  |||||| | | |||||||| ||| | |||||  |||| | ||||||||||||||  ||| ||    
T  27434710 atctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaat-caagatggaccatgactcatttagttttca 27434808  T
Q  418 tgaaccaatcaaaat 432  Q
      |||||||||||||    
T  27434809 ccaaccaatcaaaat 27434823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 11550248 - 11550312
Alignment:
Q  322 catttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaat 386  Q
    ||||||||||||||||||| || ||||||| || |||||| | | |||||||| ||| |||||||    
T  11550248 catttaatgttttcttatcatccaattaaattaaattatgactcatttattttttattaaccaat 11550312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 303 - 464
Target Start/End: Complemental strand, 5750741 - 5750578
Alignment:
Q  303 atcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaat-aaaagaagaaccatg 401  Q
    |||||||||||  | ||||||| ||||||||||||||| || ||| ||||| ||||||| ||| |||||||||||||||||| | |||| ||| |  |||    
T  5750741 atcttcacattccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatg 5750642  T
Q  402 actcatttg-ttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacatga 464  Q
    ||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  5750641 actcatttgctttttcatgagccaatcaaaatggatcatgactcatttgtaaattaatacatga 5750578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 303 - 464
Target Start/End: Complemental strand, 5787700 - 5787537
Alignment:
Q  303 atcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaat-aaaagaagaaccatg 401  Q
    |||||||||||  | ||||||| ||||||||||||||| || ||| ||||| ||||||| ||| |||||||||||||||||| | |||| ||| |  |||    
T  5787700 atcttcacattccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatg 5787601  T
Q  402 actcatttg-ttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacatga 464  Q
    ||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  5787600 actcatttgctttttcatgagccaatcaaaatggatcatgactcatttgtaaattaatacatga 5787537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 318 - 440
Target Start/End: Original strand, 30160475 - 30160597
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||| ||||| ||||||| ||| ||||||||||||||||||||||||  || | ||||||||||||||||| ||    
T  30160475 atctcatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttca 30160574  T
Q  418 tgaaccaatcaaaatggatcatg 440  Q
    ||| |||||||||||||||||||    
T  30160575 tgagccaatcaaaatggatcatg 30160597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 322 - 440
Target Start/End: Complemental strand, 20795465 - 20795347
Alignment:
Q  322 catttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaa 421  Q
    |||||||||||||| |||| || ||| ||||| ||||||| ||| ||||||||||||||||||||||||  || | ||||||||||||||||| |||||     
T  20795465 catttaatgttttcatatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 20795366  T
Q  422 ccaatcaaaatggatcatg 440  Q
    |||||||||||| ||||||    
T  20795365 ccaatcaaaatgaatcatg 20795347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 311 - 440
Target Start/End: Original strand, 9149 - 9278
Alignment:
Q  311 attttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttg 410  Q
    |||||| ||| ||||||||||||||||||| || ||| ||||| ||||||  ||| ||||||||||||||||||||||||  || | ||||||||||||     
T  9149 attttccatcccatttaatgttttcttatcatccaatcaaaatggattataacacatttattttatatcaaccaataaaaagaggatcatgactcattta 9248  T
Q  411 ttttacatgaaccaatcaaaatggatcatg 440  Q
    |||| ||||| |||||||||||||||||||    
T  9249 tttttcatgagccaatcaaaatggatcatg 9278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 438
Target Start/End: Original strand, 19095360 - 19095476
Alignment:
Q  322 catttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttacatgaa 421  Q
    ||||||||||||||||||| |  ||| ||||| ||||||| ||| ||||||||||||||||||||||||  || | ||||||||||||||||| |||||     
T  19095360 catttaatgttttcttatcattcaataaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 19095459  T
Q  422 ccaatcaaaatggatca 438  Q
    |||||||||||||||||    
T  19095460 ccaatcaaaatggatca 19095476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 43382212 - 43382292
Alignment:
Q  254 atctttattataaacatttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgtttt 334  Q
    |||||||||||||||||||||||||||| ||||||| |||||| || | ||||||||||| |  |||||||||||||||||    
T  43382212 atctttattataaacatttgtcttcctttaaatcaagagtacatgtgacatcttcacattcttcatctcatttaatgtttt 43382292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 45915036 - 45915087
Alignment:
Q  389 aagaagaaccatgactcatttgttttacatgaaccaatcaaaatggatcatg 440  Q
    |||| ||||||||||||||||  ||| ||| |||||||||||||||||||||    
T  45915036 aagatgaaccatgactcatttagttttcatcaaccaatcaaaatggatcatg 45915087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 463
Target Start/End: Complemental strand, 17462052 - 17461900
Alignment:
Q  311 attttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttg 410  Q
    ||||| ||||||||||| |||||| |||||  | ||| ||||| |||||||  || |||||||||||||||||||||||||||| |  ||||||||||||    
T  17462052 attttatatctcatttagtgtttttttatcaaccaatcaaaatggattatgatacatttattttatatcaaccaataaaagaag-attatgactcatttg 17461954  T
Q  411 ttttacatgaaccaatcaaaatggatc-atggctcatttgtaaattaatacatg 463  Q
    | ||  ||||||||||||||||||||| | |  |||||||||||||||||||||    
T  17461953 tgttttatgaaccaatcaaaatggatcaacgagtcatttgtaaattaatacatg 17461900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 37069804 - 37069667
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||| |||||  |||  |  || |||||||||||||||||||||||| ||| |  ||||| |||||||||| |     
T  37069804 atctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttcg 37069707  T
Q  418 tgaaccaatcaaaatggatcatggctcatttgtaaattaa 457  Q
    ||| ||||||||||||||||||| ||||||||||||||||    
T  37069706 tgagccaatcaaaatggatcatgactcatttgtaaattaa 37069667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 13923330 - 13923266
Alignment:
Q  399 atgactcatttgttttacatgaaccaatcaaaatggatcatggctcatttgtaaattaatacatg 463  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  13923330 atgactcatttgtttttcatgagccaatcaaaatggatcatgactcatttgtaaattaatacatg 13923266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 432
Target Start/End: Complemental strand, 18066847 - 18066734
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||||||| |  |||||| | | |||||||| ||| | |||||  |||| | ||||||||||||||  ||| ||    
T  18066847 atctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaat-caagatggaccatgactcatttagttttca 18066749  T
Q  418 tgaaccaatcaaaat 432  Q
      |||||||||||||    
T  18066748 ccaaccaatcaaaat 18066734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 12573831 - 12573879
Alignment:
Q  248 atctttatctttattataaacatttgtcttccttcaaatcaaaagtaca 296  Q
    |||||||||||||||||||||||||  ||| | |||||| |||||||||    
T  12573831 atctttatctttattataaacattttccttgcatcaaataaaaagtaca 12573879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 263 - 411
Target Start/End: Original strand, 11127715 - 11127864
Alignment:
Q  263 ataaacatttgtcttccttcaaatcaaaagtacacgttatatcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgt 362  Q
    ||||||||||  ||||||||||||  |||||||||||   ||||||| |||||  |||||||||||| |||| |||||  | ||| ||||| |||||||     
T  11127715 ataaacatttaccttccttcaaattgaaagtacacgtggcatcttcatatttttcatctcatttaatattttattatcaaccaatcaaaatggattatga 11127814  T
Q  363 cacgtttattttatatcaaccaataaaagaaga-accatgactcatttgt 411  Q
    ||| |||||||||||||||||||||||| || | | ||||||||||||||    
T  11127815 cacatttattttatatcaaccaataaaaaaaaagatcatgactcatttgt 11127864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 26649 - 26786
Alignment:
Q  303 atcttcacattttctatctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttat-tttatatcaaccaataaaagaagaaccatg 401  Q
    ||||||||||| |  ||||||||||||||||||||||| || ||| ||| |  |||||| | | || || ||| ||| ||||||| || || ||||||||    
T  26649 atcttcacattcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactcattcatatttttattaaccaatcaa-gatgaaccatg 26747  T
Q  402 actcatttgttttacatgaaccaatcaaaatggatcatg 440  Q
    ||||||||  ||| ||| |||||||||||||||||||||    
T  26748 actcatttagttttcatcaaccaatcaaaatggatcatg 26786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 440
Target Start/End: Complemental strand, 7946604 - 7946482
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttat-atcaaccaataaaagaagaaccatgactcatttgttttac 416  Q
    ||||||||||||||||||||||| || ||| ||| || |||||| | | || ||||| | || | ||||| || || ||||||||||||||||  ||| |    
T  7946604 atctcatttaatgttttcttatcatccaatcaaattaaattatgactcattcatttttttattagccaatcaa-gatgaaccatgactcatttagttttc 7946506  T
Q  417 atgaaccaatcaaaatggatcatg 440  Q
    || |||||||||||||||||||||    
T  7946505 atcaaccaatcaaaatggatcatg 7946482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 432
Target Start/End: Complemental strand, 52653 - 52540
Alignment:
Q  318 atctcatttaatgttttcttatcttctaattaaaatagattatgtcacgtttattttatatcaaccaataaaagaagaaccatgactcatttgttttaca 417  Q
    ||||||||||||||||||||||| || ||||||| |  |||||| | | |||||||| ||| | |||||  |||| | ||||||||||||||  ||| ||    
T  52653 atctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaat-caagatggaccatgactcatttagttttca 52555  T
Q  418 tgaaccaatcaaaat 432  Q
      |||||||||||||    
T  52554 ccaaccaatcaaaat 52540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University