View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_high_8 (Length: 519)
Name: NF3943_high_8
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 36621726 - 36622231
Alignment:
| Q |
1 |
tcatgcaactacatgtactatattgttgacatatgcacatccaaaaataaggactcaatccaatcaatgataatgtgaaaaacttattgacaatgagtcc |
100 |
Q |
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| T |
36621726 |
tcatgcaactacatgtgctatattgttgacatatacacatccaaaaataaggactcaaaccaatcaatgataatgtgaaaaatttattgacaatgagtcc |
36621825 |
T |
|
| Q |
101 |
ttgatgtgggaacaaattatttccaacaaaatttcaaacaaataaattgcaagtgaacaaataactagtgatgtactagtgcatgattcactcatttgga |
200 |
Q |
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| T |
36621826 |
ttgatgtgggaacaaattatttccaacaaaatttcaaacaaataaattggaagtgaacaaataactagtgatgtactagtgcatgattcactcatttgga |
36621925 |
T |
|
| Q |
201 |
tccaaagccaaaccataagaaatcaatgttcaaagatgtcaaattcgaaaacctagataatagctattaggaagtggggaagcaatattaatccctacac |
300 |
Q |
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| T |
36621926 |
tccaaagccaaaccataagaaatcaatgttcaaagatgtcaaattcgaaaacctagataatagctattaggaagtggggaagcaatattaatccctacac |
36622025 |
T |
|
| Q |
301 |
ctaaaaatccattagctccaatatttgatgaagaaacattggattgttccatcatgcatttgctagcaatttttccaagattcttcctcaggtcctcaat |
400 |
Q |
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| T |
36622026 |
ctaaaaatccattagctccaatatttgatgaagaaacattggattgttccatcatgcatttgctagcaatttttccaagattcttcctgaggtcctcaat |
36622125 |
T |
|
| Q |
401 |
agaaacctttaactggagcaattcattcaagccaagttcatcaacagggctttcccaccaaaattgcatttgcctagcttttctcacatgatctatctct |
500 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36622126 |
agaaacctttaattggagcaattcattcaagccaagttcatcaacagggctttcccaccaaaattgcatttgcctagcttttctcacatgatctatctct |
36622225 |
T |
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| Q |
501 |
tcccct |
506 |
Q |
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|||||| |
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| T |
36622226 |
tcccct |
36622231 |
T |
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