View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_11 (Length: 512)
Name: NF3943_low_11
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 311 - 505
Target Start/End: Complemental strand, 55447896 - 55447702
Alignment:
| Q |
311 |
tatacccgataattattttcaactattatcccattttttatccccaacccaaaggatgggaatcacttattcccaacggttaacatccattaaatgtcac |
410 |
Q |
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| T |
55447896 |
tatacccgataattattttcaactattatcccattttttattcccaacccaaaggatgggaatcacttattcccagcggttaacatccattaaatgtcac |
55447797 |
T |
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| Q |
411 |
aaaatttcatttctaccctttaagcaactgcatcatcccacgtctctgcatatttatgtgccacgttttcttcctgcctttacacaggttctgct |
505 |
Q |
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| T |
55447796 |
aaaatttcatttctaccctttaagtaactgcatcaccccacgtctctgcctatttatgtgccacgttttcttcctgcctttacacaggttttgct |
55447702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 199 - 505
Target Start/End: Original strand, 41415607 - 41415910
Alignment:
| Q |
199 |
ggggcatttgtttcacttctacaaaataagttcatgagaatgtaagatgagaactatttattccaatgtttggtacacatgcatnnnnnnnnnnnngttt |
298 |
Q |
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| T |
41415607 |
ggggcgtttgtttcccctctacaaaataagttcctgggaatgtaagatgggaactatttattgcaatgtttggtacacatgcatacaaaaag----gttc |
41415702 |
T |
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| Q |
299 |
taaggaattaattatacccgataattattttcaactat--tatcccattttttatccccaacccaaaggatgggaatcacttattcccaacggttaacat |
396 |
Q |
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| T |
41415703 |
caaggaattaattatacccggtaattatttttaactatattctcccattttttattcccagcacaaaggatgggaatgacttattcccagcggttaacat |
41415802 |
T |
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| Q |
397 |
ccattaaatgtcacaaaatttcatttctaccctttaagcaactgcat--catcccacgtctctgcatatttatgtgccacgttttcttcctgcctttaca |
494 |
Q |
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| T |
41415803 |
ccatt-aatatctcaaaagttcatttctacccctt--gtaaccgcatggcatcccacgtttctacctacttatgtgttacgttttcttcttgtctttaca |
41415899 |
T |
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| Q |
495 |
caggttctgct |
505 |
Q |
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|||||| |||| |
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| T |
41415900 |
caggttttgct |
41415910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 55448227 - 55448130
Alignment:
| Q |
1 |
tactagctagatctctgctgctctgctcttcctccacttctcatctcaattccgtcattttctttttcaatccccgtcaatttagtaattaatatgtg |
98 |
Q |
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| T |
55448227 |
tactaactagatctctgctgctctgctcttcctccacttctcatctcaattccgtcattttctttttcaatccccgtcaatttagtaattaatatgtg |
55448130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 55448043 - 55447954
Alignment:
| Q |
193 |
ctcttaggggcatttgtttcacttctacaaaataagttcatgagaatgtaagatgagaactatttattccaatgtttggtacacatgcat |
282 |
Q |
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| T |
55448043 |
ctcttaggggcgtttgtttcacttctacaaaataagtttctgagaatgtaagataggaactatttattccaatgtttgatacacatgcat |
55447954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 428
Target Start/End: Complemental strand, 41418502 - 41418302
Alignment:
| Q |
225 |
taagttcatgagaatgtaagatgagaactatttattccaatgtttggtacacatgcatnnnnnnnnnnnngttttaaggaattaattatacccgataatt |
324 |
Q |
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| T |
41418502 |
taagttcctgggaatgtaagatgggaactatttattccaatatttggtacacatgcatacaaaaag----gttccaagaaattaattatatccggtaatt |
41418407 |
T |
|
| Q |
325 |
attttcaactat--tatcccattttttatccccaacccaaaggatgggaatcacttattcccaacggttaacatccattaaatgtcacaaaatttcattt |
422 |
Q |
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| T |
41418406 |
atttttaactatattatcccatattttattcccaacagaaaggatgggaatgacttattccaagcagttaacatccatt-aatatctcaaaagttcattt |
41418308 |
T |
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| Q |
423 |
ctaccc |
428 |
Q |
| |
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|||||| |
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| T |
41418307 |
ctaccc |
41418302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 36366930 - 36366884
Alignment:
| Q |
236 |
gaatgtaagatgagaactatttattccaatgtttggtacacatgcat |
282 |
Q |
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|||| ||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
36366930 |
gaatctaagatgagaattatttattcctatgtttggtatacatgcat |
36366884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 6813440 - 6813394
Alignment:
| Q |
236 |
gaatgtaagatgagaactatttattccaatgtttggtacacatgcat |
282 |
Q |
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|||| ||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
6813440 |
gaatctaagatgagaattatttattcctatgtttggtatacatgcat |
6813394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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