View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_12 (Length: 493)
Name: NF3943_low_12
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 127 - 476
Target Start/End: Original strand, 4342860 - 4343211
Alignment:
| Q |
127 |
ctatagtttgaattatacaaccgttacatat--aagtttgaaaagtgtttgtggattaaagatatattttctaccattaaaattcaaaaaatagaatttt |
224 |
Q |
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| T |
4342860 |
ctatagtttgaattatacaaccgttacatatataagtttgaaaagtgtttgtggattaaagatatattttctaccattaaaattcaaaaaatagaatttt |
4342959 |
T |
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| Q |
225 |
gtttgctaataaaaatttgacagttgacctatttatgtcattatatgaattttaatactgagaagttatgagtaatattgttatgagtagattatcatca |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4342960 |
gtttgctaataaaaatttgacagttgacctatttatgtcattatatgaatttgaatactgagaagttatgagtaatattgttatgagtagattatcatca |
4343059 |
T |
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| Q |
325 |
tttgaatgctgagaagttatgagttaagtttcctaatagatattgtacttgctgcagttactgctctgtcgtctctcatacaatcctggaaaaacaaacc |
424 |
Q |
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| T |
4343060 |
attgaatgctgagaagttatgagttaagtttcctaatagatattgtacttgctgcagttactgctctgtcgtctctcatacaatcctggaaaaacaaacc |
4343159 |
T |
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| Q |
425 |
attaaattgggtgggctctgatccttgtggaagtgattgggatggaattcgt |
476 |
Q |
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| T |
4343160 |
attaaattgggtgggctctgatccttgtggaagtgattgggatggaattcgt |
4343211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 473
Target Start/End: Original strand, 4361224 - 4361346
Alignment:
| Q |
350 |
aagtttcctaatagatattgtacttgctgcagttactgctctgtcgtctctcatacaatcctggaaaaacaaaccattaaattgggtgggctctgatcct |
449 |
Q |
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| T |
4361224 |
aagtttcctaatagaagttgttatt-ctgcagttactgctctttcttctctcacacaatcctggaacaacagaccatcaaattgggtggggtctgatcct |
4361322 |
T |
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| Q |
450 |
tgtggaagtgattgggatggaatt |
473 |
Q |
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| T |
4361323 |
tgtggcagtaattgggctggaatt |
4361346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4342804 - 4342864
Alignment:
| Q |
1 |
cggagattgtaagttactacgtttgagtaactaatctctaacaaacttgttataatctata |
61 |
Q |
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| T |
4342804 |
cggagattgtaagttactatgtttgagtaactaatctctaacaaacttgtgctaatctata |
4342864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 4360825 - 4360897
Alignment:
| Q |
157 |
taagtttgaaaagtgtttgtggattaaagatatattttctaccattaaaattcaaaaaatagaattttgtttgcta |
232 |
Q |
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| T |
4360825 |
taagtttgggaagtctttgtggattgaagatatatt--ctgccattaaaattc-aaaaatagaactttgtttgcta |
4360897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 30745566 - 30745523
Alignment:
| Q |
28 |
taactaatctctaacaaacttgttataatctatactatatacatc |
72 |
Q |
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| T |
30745566 |
taactaatctctatcaa-cttgttataatctatagtatatacatc |
30745523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 30767017 - 30766974
Alignment:
| Q |
28 |
taactaatctctaacaaacttgttataatctatactatatacatc |
72 |
Q |
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| T |
30767017 |
taactaatctctatcaa-cttgttataatctatagtatatacatc |
30766974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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