View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_14 (Length: 461)
Name: NF3943_low_14
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 42553491 - 42553066
Alignment:
| Q |
18 |
gcatgattggtttaggagtatggctgatgagccattacgatctcctattactccatttataagacatggcagggatcagtggaataatgttgatattgat |
117 |
Q |
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| T |
42553491 |
gcatgattggtttaggagtatggctgatgagccattacgatctcctattactccatttataagacatggcagggatcagtggaataatgttgatattgat |
42553392 |
T |
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| Q |
118 |
caggttgatgctgaggtctccttgtggaactttaccatctaatctat--------------ttcttctactttcaaattcttttttattttaattagtac |
203 |
Q |
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| T |
42553391 |
caggttgatgctgaggtctccttgtggaactttaccatctaatctatgagatgcattttgctttttgtactttgaaattcttttttatttta----gtac |
42553296 |
T |
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| Q |
204 |
atgtagtttgtaattcttatcacatacgattgtgaaaaacagtagtaattctcaacaatgatcatatttttaagttgttcagacttcagactatcctcac |
303 |
Q |
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| T |
42553295 |
atgtagtttgtaattcttatcacatacgattgtgaaaaacagtagtaattctcaacaatgatcatatttttaagctgttcagacttcagactatcctcac |
42553196 |
T |
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| Q |
304 |
agggaacatggcttttgattaaattcaagcagagtgcattcgacccatcacctaacaatattaagttatat--atatgctgaatgaaacnnnnnnnttga |
401 |
Q |
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| T |
42553195 |
agggaacatggcttttgattaaattcaagcagagtgcattcgacccatcacctaacaatattaagttatatatatatgctgaatgaaac-aaaaaattga |
42553097 |
T |
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| Q |
402 |
tatgtatacatgacaggataaattcagatta |
432 |
Q |
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| T |
42553096 |
tatttatacatgacaggataaattcagatta |
42553066 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 461
Target Start/End: Complemental strand, 932139 - 932109
Alignment:
| Q |
431 |
tattttcttggcttaattgcacttttggacc |
461 |
Q |
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| T |
932139 |
tattttcttggcttaattgcacttttggacc |
932109 |
T |
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