View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3943_low_15 (Length: 459)
Name: NF3943_low_15
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_15 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 2041055 - 2040614
Alignment:
| Q |
1 |
agagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaagg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041055 |
agagtttcattcacttggttgcagctgtatgaggctaaggtcaaaagagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaagg |
2040956 |
T |
|
| Q |
101 |
aagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggatacaactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040955 |
aagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccagcgaaagaagattttgtggagataatggatctggatacaactt |
2040856 |
T |
|
| Q |
201 |
gtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaaggagaggaattggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040855 |
gtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaaggagaggaattggt |
2040756 |
T |
|
| Q |
301 |
tcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgcttttagataacaatgct |
400 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040755 |
tcaacttccaaatatctcactttttaagaacgaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgcttttagataacaatgc- |
2040657 |
T |
|
| Q |
401 |
atagtttcattgtaagttgtaactcttactttgataagtgtatt |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2040656 |
-tagtttcattgtaagttgtaactcttactttgataagtgtatt |
2040614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 1352600 - 1352972
Alignment:
| Q |
12 |
cacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgca |
111 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
1352600 |
cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgaaacgctacaaggaagaagatgca |
1352699 |
T |
|
| Q |
112 |
agaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggatacaacttgtcagtgaaga |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352700 |
agaaaacaaagcaggcaaatcaaaacatgcaccaaacttccacccagtgaaagaagattttgtggagataatggatctggatacaacttgtcagtgaaga |
1352799 |
T |
|
| Q |
212 |
gcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaaggagaggaattggttcaacttccaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1352800 |
gcagcaacataatgaagaagtcaaagaaggattttcttaatagttttgaggtcaaaaatatcacagcaatgaaaaggagaggaattggttcaacttccaa |
1352899 |
T |
|
| Q |
312 |
atatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgct |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1352900 |
atatctcactttttaagaaggaaattttaggggcaggcaatgaggataacaatgctatgtatcattatttgct |
1352972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 1357723 - 1357895
Alignment:
| Q |
1 |
agagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaagg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357723 |
agagtttcattcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaagg |
1357822 |
T |
|
| Q |
101 |
aagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttg |
173 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||| |
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|
| T |
1357823 |
aagaagatgcaagaaaacaaagcaggcaaatcaaaacatgcaccaaacttccaccaagtaaaagaagattttg |
1357895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 1364551 - 1364732
Alignment:
| Q |
12 |
cacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgca |
111 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1364551 |
cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgcaacgctacaaggaagaagatgca |
1364650 |
T |
|
| Q |
112 |
agaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggat |
193 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||| |||||| |
|
|
| T |
1364651 |
agaaaacaaagcaggcaaatcaaaacatgcaccaaacttccaccaagtaaaagaagattttgtggagatgatggacctggat |
1364732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 388
Target Start/End: Original strand, 1357941 - 1358035
Alignment:
| Q |
293 |
gaattggttcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgctttta |
388 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| | | |||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
1357941 |
gaattgtttcaacttccaagtatctcactttttaaggat-attttttaggggcaggcaatgaggataacaatgctatgtatcattatttgatttta |
1358035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 10043832 - 10043776
Alignment:
| Q |
229 |
aagtcaaagaaggattttcttaatag-cttggaggtcaaaaataacacagcaatgaa |
284 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
10043832 |
aagtcaaagaaagattttcttaatagtttttgaggtaaaaaatatcacagcaatgaa |
10043776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 36717635 - 36717912
Alignment:
| Q |
1 |
agagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaagg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36717635 |
agagtttcattcacttggttgcagctgtatgaggctaaggtaaaaaaaatggctcaggctgagaatgaagcagttgatcgactcgcgcaacgctacaagg |
36717734 |
T |
|
| Q |
101 |
aagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggatacaactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| | | |||||||||||| |||||| || ||| |||||| ||| | |
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|
| T |
36717735 |
aagaagatgcaagaaaacaaagcaggaaaataaaaacatgcaccatagttccacctaataaaagaagattttctggagacaacggacctggat-caaat- |
36717832 |
T |
|
| Q |
201 |
gtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
36717833 |
----gtgaagagcagcaacataatgaagaagtcaaagaaagattttcttaatagttttgaggtaaaaaatatcacagcaatgaa |
36717912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 36717977 - 36718085
Alignment:
| Q |
292 |
ggaattggttcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgcttttagat |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
36717977 |
ggaattggttcaacttccaaatatctcactttttaaga---------------caggcaatgagaataacaatgctatatatcattatttccttttagat |
36718061 |
T |
|
| Q |
392 |
aacaatgctatagtttcattgtaa |
415 |
Q |
| |
|
|| ||||||||| ||||||||||| |
|
|
| T |
36718062 |
aagaatgctatattttcattgtaa |
36718085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 24619969 - 24619733
Alignment:
| Q |
19 |
ttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgcaagaaaac |
118 |
Q |
| |
|
||||||||| || | |||||||| |||||| | |||||| | | ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||| |
|
|
| T |
24619969 |
ttgcagctgaataaagctaaggtaaaaaaaatagctcaggttaaaaatgaagcagttgatcgacccacgcaatgctaaaaggaagaagatgcaagaaaac |
24619870 |
T |
|
| Q |
119 |
aaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggatacaacttgtca---gtgaagagcag |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| | | |||||||||| ||||||| ||||||| || |||||||||| ||| ||||||||||| |
|
|
| T |
24619869 |
aaagcaggaaaataaaaacatgcaccaaaattccacctagtaaaagaagattgtgtggaggtaatggacctagatacaacttctcaaatgtgaagagcag |
24619770 |
T |
|
| Q |
216 |
caacataatgaagaagtcaaagaaggattttcttaat |
252 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
24619769 |
caacataatgaagaaatcaaagaaatattttcttaat |
24619733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 18178806 - 18178754
Alignment:
| Q |
336 |
ttttagggtcaggcaatgaagataacaatgctatgtatcattatttgctttta |
388 |
Q |
| |
|
|||||||| ||| |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
18178806 |
ttttaggggcagacaatgaggatagcaatgctatgtatcattatttgctttta |
18178754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 18179711 - 18179644
Alignment:
| Q |
32 |
aggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaag |
99 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
18179711 |
aggctaagggaaaagaagtggctcaggctgagaatgaagcaattgatcgactcagggaacgctacaag |
18179644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 18179290 - 18179206
Alignment:
| Q |
167 |
gattttgtggagataatggatctggatacaacttgtca---gtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaa |
251 |
Q |
| |
|
|||||| || |||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||||| |
|
|
| T |
18179290 |
gattttttgtagataatggacctggatacaacgtgtcaaatgtgaag---agcaacataatgaagaagtcaaagatagaatttcttaa |
18179206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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