View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_17 (Length: 440)
Name: NF3943_low_17
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 2518182 - 2517762
Alignment:
| Q |
13 |
gttatgtgatttgggcttaaaatcccttgatgtgtagcttgtgattagaattttagttttatttttaagtcgagattgaaattaatcaaagaatagttgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518182 |
gttatgtgatttgggcttaaaatcccttgatgtgtagcttgtgattagaattttagttttatttttaagtcgagattgaaattaatcaaagaatagttgc |
2518083 |
T |
|
| Q |
113 |
aacatcgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtgtctaaagttgtggaatctggacacaaaga |
212 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518082 |
aacattgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaattgctggctgtggtgtgtctaaagttgtggaatctggacacaaaga |
2517983 |
T |
|
| Q |
213 |
ttataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517982 |
ttataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgtt |
2517883 |
T |
|
| Q |
313 |
cctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattttgtagtcaagaatgcacttgatgtgagtatgatat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517882 |
cctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattttgtagtcaagaatgcacttgatgtgagtatgatat |
2517783 |
T |
|
| Q |
413 |
caaggccttaagtgatgatgt |
433 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
2517782 |
caaggccttaagttatgatgt |
2517762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 84 - 377
Target Start/End: Complemental strand, 2513892 - 2513601
Alignment:
| Q |
84 |
gagattgaaattaatcaaagaatagttgcaacatcgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtg |
183 |
Q |
| |
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|||||||||| | ||||||||||| |||||| || || |||| | ||| |||||| ||||||||||| ||||||||||| ||| |||| | ||||||| |
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| T |
2513892 |
gagattgaaacttatcaaagaataattgcaatattgaggttgtattgtgcagctactgatgatttttg--taattgcagccgataactggttatggtgtg |
2513795 |
T |
|
| Q |
184 |
tctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaa |
283 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2513794 |
tctaaagttctagaatctggacacaaagattataaagaaggtgatatcgtgtgggggataactaattgggaagagtacagcttgatccctgcagcacaaa |
2513695 |
T |
|
| Q |
284 |
tacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattt |
377 |
Q |
| |
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||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||| || ||||||||||||| ||| |||||||| |
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| T |
2513694 |
tacattttaaaattgagcacactgatgttcctctttcctactatacaggaattcttggtatgtgatccacaatttcaattttttatgttgattt |
2513601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 95 - 348
Target Start/End: Complemental strand, 2507221 - 2506970
Alignment:
| Q |
95 |
taatcaaagaatagttgcaacatcgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtgtctaaagttgt |
194 |
Q |
| |
|
||||||||||||| |||||| || ||| |||| | ||| || ||| ||||||||||| ||||||||||| || |||| | |||||||||||||||||| |
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| T |
2507221 |
taatcaaagaataattgcaatattgaagttgtattgtgcagttactgatgatttttg--taattgcagccgttaactggttatggtgtgtctaaagttgt |
2507124 |
T |
|
| Q |
195 |
ggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaa |
294 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| || ||||||| ||||||| |
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| T |
2507123 |
ggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgggaagagtacagcttgatccctgcggcacaaatacatttcaaa |
2507024 |
T |
|
| Q |
295 |
attgaacacacagatgttcctctttcgtactatactggaattcttggtatgtat |
348 |
Q |
| |
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||||| || || |||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
2507023 |
attgagcatactgatgttcctctttcctactatactggaattctaggtatgtat |
2506970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 181 - 364
Target Start/End: Original strand, 2428420 - 2428603
Alignment:
| Q |
181 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| |||||||||||| |
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| T |
2428420 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctc |
2428519 |
T |
|
| Q |
281 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
364 |
Q |
| |
|
||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2428520 |
aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
2428603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 181 - 364
Target Start/End: Original strand, 1458713 - 1458896
Alignment:
| Q |
181 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| | ||||| ||||||||||| || ||| |||||||||||| |
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| T |
1458713 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc |
1458812 |
T |
|
| Q |
281 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
364 |
Q |
| |
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||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1458813 |
aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
1458896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 154 - 366
Target Start/End: Complemental strand, 2498231 - 2498019
Alignment:
| Q |
154 |
taattgcagccaatagctggctgtggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattggg |
253 |
Q |
| |
|
||||||||| |||||| || | ||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||| ||||| || ||| |||| |
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|
| T |
2498231 |
taattgcaggtaatagcaggttttggggtgtctaaagtccttgaatcaggacatcctgattataaggaaggtgatttagtttggggattctgtaaatggg |
2498132 |
T |
|
| Q |
254 |
aagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaac |
353 |
Q |
| |
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|||||||||||||| ||||| || |||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||||||| |||||| |
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| T |
2498131 |
aagagtacagcttggtcccttcatctcaaatacttttcaaaattgagcacactgatgtcccactttcctactatactggaatactcggtatgttttcaac |
2498032 |
T |
|
| Q |
354 |
aatttcaatttat |
366 |
Q |
| |
|
||||||||||||| |
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|
| T |
2498031 |
aatttcaatttat |
2498019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 2431399 - 2431491
Alignment:
| Q |
181 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccct |
273 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| ||||| |
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|
| T |
2431399 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccct |
2431491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 343
Target Start/End: Original strand, 2434784 - 2434943
Alignment:
| Q |
181 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||| ||| ||| | ||||||| ||||||||||| || ||| | ||| || || |
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|
| T |
2434784 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgattcagtttggagtcttactaaatgggaagagtatagtttggttcctacaactg |
2434883 |
T |
|
| Q |
281 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggta |
343 |
Q |
| |
|
|| ||||||||||||| |||| ||||| || ||||| || ||||| ||||||||||||| |
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|
| T |
2434884 |
gaa---ttttcaaaattgagcacaatgatgtcccactttcctattataccggaattcttggta |
2434943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 50703558 - 50703459
Alignment:
| Q |
211 |
gattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatg |
310 |
Q |
| |
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||||||||||||||||||| ||| ||||| || ||| |||||||||||||||||| | ||| | |||||||||||||||||||||| ||||| |||| |
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| T |
50703558 |
gattataaggaaggtgattaagtttggggattctgtaaatgggaagagtacagcttggtacct-tatctcaaatacttttcaaaattgagcacactgatg |
50703460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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