View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3943_low_18 (Length: 433)
Name: NF3943_low_18
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_18 |
 | |
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| [»] scaffold0005 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 26535286 - 26535691
Alignment:
| Q |
18 |
ggatttggttggtttaaaggttatgttctcatatcctgttatatttcagatccggtatgtccttcggcaactccttgtgtcggaggatacatatggtttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26535286 |
ggatttggttggtttaaaggttatgttctcatatcctgttatatttcagatccggtatgtccttcggcaactccttgtgtcggaggatacatatggtttt |
26535385 |
T |
|
| Q |
118 |
gggctcgaaagggctggtatagctgttgtgtgattgcaagggctattagttcgtgaattcttctgtattgacagttgatttatacaccattattcacaag |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
26535386 |
gggctcgaaagggctggtatagctgctgtgtgattgcaagggctattggttcgtgaattcttctgtgttgacagttgattcatacaccattattcacaag |
26535485 |
T |
|
| Q |
218 |
gttacttcggtgtcatatatgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcga |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
26535486 |
gttactttggtgtcatatatgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgcaggtttcagagatatggtgatgcatcga |
26535585 |
T |
|
| Q |
318 |
tgcttctaatatatgtcgcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggacctgaatgag |
417 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26535586 |
tgcttttaatatatgtcgcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggacctgaatgag |
26535685 |
T |
|
| Q |
418 |
tctctg |
423 |
Q |
| |
|
|||||| |
|
|
| T |
26535686 |
tctctg |
26535691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 407
Target Start/End: Complemental strand, 28216046 - 28215874
Alignment:
| Q |
237 |
tgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcgatgcttct--aatatatgtc |
334 |
Q |
| |
|
|||||||||| |||||||||| |||||| || || |||||||||| || |||||||| ||||||||||| ||||||||| | | ||||| |||| |
|
|
| T |
28216046 |
tgtggtcatgcctttgatttctcagattattataaggaactgttgagttctgcaggtttcaaagatatggtgacgcatcgatgttgtttgaatatctgtc |
28215947 |
T |
|
| Q |
335 |
gcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattgga |
407 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
28215946 |
gcagtccttgtggctgacttcagactgctttggaatcctggtcattcgtatgattgacattgaactaattgga |
28215874 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 217 - 419
Target Start/End: Complemental strand, 12784099 - 12783895
Alignment:
| Q |
217 |
ggttacttcggtgtcatatatgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcg |
316 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||| || | | |
|
|
| T |
12784099 |
ggttactttcgtgtcgtacatgtggtcatgtctttgatttcgatgattatgatccagagttgttgagttatgcaggtttcagagatatggtgacgcgttg |
12784000 |
T |
|
| Q |
317 |
atgcttct--aatatatgtcgcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggacctgaat |
414 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||| || ||| |
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|
| T |
12783999 |
atgctgtttgaatatatgtcgcagtcattgtggctgacttcagaatgcttagaaatcctcgtcattcgtatgattggcattggactaattggccccgaag |
12783900 |
T |
|
| Q |
415 |
gagtc |
419 |
Q |
| |
|
||||| |
|
|
| T |
12783899 |
gagtc |
12783895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 12784306 - 12784134
Alignment:
| Q |
41 |
tgttctcatatcctgttatatttcagatccggtatgtccttcggcaactccttgtgtcggaggatacatatggttttgggctcgaaagggctggtatagc |
140 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||||||||||||||| |||||| || |||||| | || ||||||||||||||||||||||| || | | |
|
|
| T |
12784306 |
tgttctcagatccaattagatttcagatccggtatgtccttcggcagctccttatgccggagggttcaaatggttttgggctcgaaagggcttatacaac |
12784207 |
T |
|
| Q |
141 |
tgttgtgtgattgcaagggctattagttcgtgaattcttctgtattgacagttgatttatacaccattattca |
213 |
Q |
| |
|
||||| || ||||||||||||||| ||||| |||| ||||||| ||| ||||||||| |||||| ||| |||| |
|
|
| T |
12784206 |
tgttgcgttattgcaagggctattggttcgcgaatccttctgtgttggcagttgattcatacactattcttca |
12784134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 226 - 420
Target Start/End: Complemental strand, 9752757 - 9752561
Alignment:
| Q |
226 |
ggtgtcatatatgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcgatgcttct- |
324 |
Q |
| |
|
||||||||| |||||||||||||| |||||| | |||||||||| ||||| ||||||||| || |||||||||||||| ||||| || |||||||| | |
|
|
| T |
9752757 |
ggtgtcatacatgtggtcatgtctctgattttgctgattatgatccagagttgttgagttctgcaggtttcagagataaggtgacgcgtcgatgctattt |
9752658 |
T |
|
| Q |
325 |
-aatatatgtcgcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggacctgaatgagtct |
420 |
Q |
| |
|
||||| ||| |||| | ||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
9752657 |
gaatatttgtggcagacgttgtggctgacttcagattgctttggaatccttgtcattcttatgattgtcattggactaattgaacccgaatgagtct |
9752561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 9752979 - 9752802
Alignment:
| Q |
36 |
ggttatgttctcatatcctgttatatttcagatccggtatgtccttcggcaactccttgtgtcggaggatacatatggttttgggctcgaaagggctggt |
135 |
Q |
| |
|
|||| |||||||| |||| |||| ||||||||| |||||||||||||||| |||||| ||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
9752979 |
ggttctgttctcagatccagttagatttcagatatggtatgtccttcggcagctccttatgtcggaggtttcagatggttttgggctcgaaagggctggt |
9752880 |
T |
|
| Q |
136 |
atagctgttgtgtgattgcaagggctattagttcgtgaattcttctgtattgacagttgatttatacaccattattca |
213 |
Q |
| |
|
| ||||| ||||| |||||| | |||||| ||| ||||| || |||| ||| |||| |||| |||||| ||| |||| |
|
|
| T |
9752879 |
acagctgctgtgttattgcaggagctattgattcctgaatcctactgtgttggcagtggattcatacactattcttca |
9752802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 236 - 418
Target Start/End: Original strand, 21046621 - 21046805
Alignment:
| Q |
236 |
atgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcgatgcttct--aatatatgt |
333 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||| ||||| ||||||||| || |||||||| ||||||||||| | |||||||| | ||||| ||| |
|
|
| T |
21046621 |
atgtggtcatttctttgatttcgctaattatgatccagagttgttgagttctgcaggtttcaaagatatggtgacacgtcgatgctatttgaatatttgt |
21046720 |
T |
|
| Q |
334 |
cgcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggacctgaatgagt |
418 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
21046721 |
cgcagttgttgtgactgacttcagactgttttggaatcctagtcattcgtataattgacattggactaattggacttgaaagagt |
21046805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 237 - 405
Target Start/End: Complemental strand, 14578035 - 14577866
Alignment:
| Q |
237 |
tgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcgatgcttct--aatatatgtc |
334 |
Q |
| |
|
||||||||||||||||||||| | ||||| || |||||||||||||| | || | ||| ||||||||||| || |||||| | | ||||| |||| |
|
|
| T |
14578035 |
tgtggtcatgtctttgatttctcttattattatctagagctgttgagttctcaag-tatcaaagatatggtgacgcgtcgatggtgtttgaatatctgtc |
14577937 |
T |
|
| Q |
335 |
gcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattg |
405 |
Q |
| |
|
|| || ||||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
14577936 |
acaatccttgtggctgacttcagaatgctttgaaatcctagtcattcgtatgattgatattggactaattg |
14577866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 21046461 - 21046564
Alignment:
| Q |
110 |
atggttttgggctcgaaagggctggtatagctgttgtgtgattgcaagggctattagttcgtgaattcttctgtattgacagttgatttatacaccatta |
209 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||||| |||||| ||| ||||||||||||||| ||||||| ||| ||||||||| |||||| ||| |
|
|
| T |
21046461 |
atggttttgggctcgaaagggctggtacaactattgtgttattgcaggggatattagttcgtgaatccttctgtgttggcagttgattcatacactattc |
21046560 |
T |
|
| Q |
210 |
ttca |
213 |
Q |
| |
|
|||| |
|
|
| T |
21046561 |
ttca |
21046564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 7620923 - 7620872
Alignment:
| Q |
157 |
gggctattagttcgtgaattcttctgtattgacagttgatttatacaccatt |
208 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
7620923 |
gggctattggttcgtgaatccttctgtgttgacagttgattcatacaccatt |
7620872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 325 - 423
Target Start/End: Complemental strand, 42266111 - 42266013
Alignment:
| Q |
325 |
aatatatgtcgcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggacctgaatgagtctctg |
423 |
Q |
| |
|
||||| ||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
42266111 |
aatatctgtcgtagtccttgtggctgatttcagactgctttggaatcctagtcattcgtatgattgacattggactaattggactcgaaagagtctctg |
42266013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 408
Target Start/End: Original strand, 17462213 - 17462385
Alignment:
| Q |
237 |
tgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcgatgcttct--aatatatgtc |
334 |
Q |
| |
|
||||||||| |||| ||||| |||| || || ||||| ||||||||| || ||||||| ||||||||||| || | |||| | | ||||| ||| |
|
|
| T |
17462213 |
tgtggtcatacctttaatttctctgatcattatccagagttgttgagttctgcaggtttccaagatatggtgacgcgttgatgttgtttgaatatttgtt |
17462312 |
T |
|
| Q |
335 |
gcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggac |
408 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
17462313 |
gcagtccttgtggctaacttcagactgctt-ggaatcttaatcatttgtatgattgacattggactaattggac |
17462385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 239340 - 239509
Alignment:
| Q |
237 |
tgtggtcatgtctttgatttcgttgattatgattcagagctgttgagttatgtaggtttcagagatatggtgatgcatcgatgcttct--aatatatgtc |
334 |
Q |
| |
|
||||||||||||||||||||| | ||||| || |||||||||||||| | || | ||| ||||||||||| || |||||| | | ||||| |||| |
|
|
| T |
239340 |
tgtggtcatgtctttgatttctcttattattatctagagctgttgagttctcaag-tatcaaagatatggtgacgcgtcgatggtgtttgaatatctgtc |
239438 |
T |
|
| Q |
335 |
gcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattg |
405 |
Q |
| |
|
|| || ||||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
239439 |
acaatccttgtggctgacttcagaatgctttgaaatcctagtcattcgtatgattgatattggactaattg |
239509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 408
Target Start/End: Original strand, 29284735 - 29284818
Alignment:
| Q |
325 |
aatatatgtcgcagtcattgtggctgacttcagactgctttggaatcctcgtcattcgtatgattgacattggactaattggac |
408 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| |||||||||| ||| || || | |||||||||| |||||||||||||||||| |
|
|
| T |
29284735 |
aatatttgtcgcagtacttgtggttgacttcggactgctttgaaattctagtaagtcgtatgattaacattggactaattggac |
29284818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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