View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_19 (Length: 423)
Name: NF3943_low_19
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 7067165 - 7066756
Alignment:
| Q |
1 |
ttaggctgcttcaagggttgaatttatcagaaggagaaggagatgaaagaggaggtgtgtatgaaactgcaggtatgttatcagagatgtttaattttgc |
100 |
Q |
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| T |
7067165 |
ttaggctgcttcaagggttgaatttatcagaaggagaaggagatgaaagaggaggtgtgtatgaaactgcaggtatgttatcagagatgtttaattttgc |
7067066 |
T |
|
| Q |
101 |
tgatccttcaacagctgaattgttagaaaccgcgacgtttcgttcttcgtcttcttcttc---aagacaactaccacaaacaacaacttcagaaaatgat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
7067065 |
tgatccttcaacagctgaattgttagaaaccgcgacgtttcgttcttcgtcttcttcttcttcaagacaactaccacaaacaacagcttcagaaaatgat |
7066966 |
T |
|
| Q |
198 |
tggtatggtaataataacagacaagggattcagcagcatcagcaacaaatttcaagcattaatgtagcagatgattcagcagctgccatgcaactttttc |
297 |
Q |
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| T |
7066965 |
tggtatggtaataataacagacaagggattcagcagcatcagcaacagatttcaagcattaatgtagcagatgattctgcagctgccatgcaactttttc |
7066866 |
T |
|
| Q |
298 |
tcatgaacccttctcaatctcatcaaacaacaacttcatcatcttctcctcctccaactcatcatcaaaattcttcaactcttcacatgttactccctaa |
397 |
Q |
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| T |
7066865 |
tcatgaacccttctcaatctcatcaaacaacaacttcatcatcttctcctcctccaactcatcatcaaaattcttcaactcttcacatgttactccctaa |
7066766 |
T |
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| Q |
398 |
ccctcctaat |
407 |
Q |
| |
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| T |
7066765 |
ccctcctaat |
7066756 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 33456118 - 33456152
Alignment:
| Q |
273 |
tcagcagctgccatgcaactttttctcatgaaccc |
307 |
Q |
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| T |
33456118 |
tcagcagctgccatgcagctttttctcatgaaccc |
33456152 |
T |
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