View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_20 (Length: 420)
Name: NF3943_low_20
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 53 - 403
Target Start/End: Complemental strand, 47251381 - 47251020
Alignment:
| Q |
53 |
aactgatattcttattgaattttatcaaatttaataaattcccatgtcatgttttttggtcaattaacaatttgtttgtttgnnnnnnnnncattactgg |
152 |
Q |
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| T |
47251381 |
aactgatattcttattgaattttatcaaatttaataaattcccatgtcatgttttttggtcaattaacaatttgtttgtttgttttttttttattaccgg |
47251282 |
T |
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| Q |
153 |
tgattataaccaatatgacagagacctgaataaatggacattgactggtcagtgttagaagacatggattaggaacaacatccacacaacataatttgga |
252 |
Q |
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| T |
47251281 |
tgatta---ccaatatgacagagacctgaataaatggacattgactggtcagtgttagaagacatggaataggaacaacatccacacaacataatttgga |
47251185 |
T |
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| Q |
253 |
caaatctcaaccgtcttcaactagactaccaagttaggcttgttaggagtgtgtcacattacattgtcttccaa--------------atgaaccaacaa |
338 |
Q |
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| T |
47251184 |
caaatctcaaccgtcttcaaccagactaccaagttaggcttgttaggagtgcgtcacattacattgtcttccaaggtatccagataagatgaaccaacaa |
47251085 |
T |
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| Q |
339 |
gaaacaaatcccactttcaaaggcaagagtcgtgagaggaataaaaagggagaggcacttttttc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47251084 |
gaaacaaatcccactttcaaaggcaagagtcgtgagaggaataaaaagggagaggcacttttttc |
47251020 |
T |
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