View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_22 (Length: 416)
Name: NF3943_low_22
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 167 - 325
Target Start/End: Complemental strand, 33766985 - 33766827
Alignment:
| Q |
167 |
gttcgttagcttcaaagtcatcaatcaagatattgaagacatttccaatattcttttctttagcaagttccatccatgaagattgaaaaggaatacaccg |
266 |
Q |
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| T |
33766985 |
gttcgctagcttcaaagtcatcaatcaagatattgaagacatttccaatattcttttctttagcaagttccatccatgaagattgaaaaggaatacaccg |
33766886 |
T |
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| Q |
267 |
tttgatgccactatatgttctatatcaacttaaatgcaacaagtcaaaaattgtatgga |
325 |
Q |
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| T |
33766885 |
tttgatgccactatatgttctatatcaacttaaatgcaacaagtcaaaaattgtatgga |
33766827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 33767148 - 33767031
Alignment:
| Q |
4 |
aggcaggtaaaacctaacataaacagtgtttttataaggaatgtgggacttataacctagctacatgctatggtggtagggacacagtgccaattttgac |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767148 |
aggcaggtaaaacctaacataaacagtgtttttataaggaatgtgggacttataacctagctacatgctatggtggtagggacacagtgccaattttgac |
33767049 |
T |
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| Q |
104 |
tttatgctaattgactac |
121 |
Q |
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| T |
33767048 |
tttatgctaattgactac |
33767031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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