View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_29 (Length: 368)
Name: NF3943_low_29
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 163 - 352
Target Start/End: Complemental strand, 35345852 - 35345663
Alignment:
| Q |
163 |
atcaatgcaagagtgttaggtttttatctcttcttaattcatccatgtttcttcgcatatcgtgatagttttttagttttaaaggtgattgtggccagta |
262 |
Q |
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| T |
35345852 |
atcaatgcaagagtgttaggtttttatctcttcttaattcatccatgtttcttcgcatatcatgatagttttttagttttgaaggtgattgtggcctgta |
35345753 |
T |
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| Q |
263 |
tctgtttaatttgtttgcattgtatacgaaccgcagtttaaaacatgatgatcagtttaagaaaatggattgagagagaaaggtataaaa |
352 |
Q |
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| T |
35345752 |
tctgtttaatttgtttgcattgtatacgaaccgcagtttaaaacatgatgatcagtttaagaaaagggattgagagagaaaggtataaaa |
35345663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 35346010 - 35345892
Alignment:
| Q |
1 |
aaactctaatgtgttaacttacataagtatagtagttaatatcaaagcctattgaagatatagttagtagtcgtttaatatagttagttaaaaattagtc |
100 |
Q |
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| T |
35346010 |
aaactctaatgtgttaacttacataagtatagtagttaatatcaaagcctattgaagatatagttagtagtcgtttaatata----gttaaaaattagta |
35345915 |
T |
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| Q |
101 |
cttaactattaattgtagtacta |
123 |
Q |
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| T |
35345914 |
cttaactattaattgtagtacta |
35345892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35355617 - 35355534
Alignment:
| Q |
1 |
aaactctaatgtgttaacttacataagtatagtagttaatatcaaagcctattgaagatatagttagtagtcgtttaatatagtt |
85 |
Q |
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| T |
35355617 |
aaactctaatgtgttaacttacataagtc-actagttagtattatagcatattgaagatatagttaatagtcgtttaatatagtt |
35355534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35371514 - 35371408
Alignment:
| Q |
1 |
aaactctaatgtgttaacttacataagtatagtagttaatatcaaagcctattgaagatatagttagtagtcgtttaatatagttagttaaaaattagtc |
100 |
Q |
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| T |
35371514 |
aaactctaatgtgttaacttacattagtcttctagttagctttatagcatattaaagatatagttggtagtcgattaatatagttcg----aaattagta |
35371419 |
T |
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| Q |
101 |
cttaactatta |
111 |
Q |
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| T |
35371418 |
cttaactatta |
35371408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 35343666 - 35343753
Alignment:
| Q |
1 |
aaactctaatgtgttaacttacataagtatagtagtta--atatcaa-agcctattgaagatatagttagtagtcgtttaatatagtt |
85 |
Q |
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| T |
35343666 |
aaacactaatgtgttaacttacattagtcttctagttaggatatttacagcatattgaagatatagttagtagtcgtttaataaagtt |
35343753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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