View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_3 (Length: 736)
Name: NF3943_low_3
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 38 - 599
Target Start/End: Complemental strand, 27565896 - 27565338
Alignment:
| Q |
38 |
cctctgtttaatgcatctaaaattctttctctgatctaaatctacacttaaatttgtttcnnnnnnnattgattgaatgatacaaaaacttttattgttt |
137 |
Q |
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| T |
27565896 |
cctctgtttaatgcatctaaaattctttctctgatctaaatctacacttaaatttgtttctttttttattgattgaatgagacaaaaacttttattgttt |
27565797 |
T |
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| Q |
138 |
gaatattgtatggttgttttaaataatagaaagaaaacccgaatatt-aatctctggtttgaaaacccagatatatcttacagaaataattatttaacat |
236 |
Q |
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| T |
27565796 |
gaatattgtatggttgttttaaataatagaaagaaaacccgaatatttaatctctggtttgaaaacccagatatatcttacagaaataattatttaacat |
27565697 |
T |
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| Q |
237 |
caaatttttggtgctttaaaaaataacatgtcacataatatatgtcatgaattttagaaatatgtataagttgacaatgtttcaccatatgtactattta |
336 |
Q |
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| T |
27565696 |
caaatttttggtgttttaaaaaataacatgtcacataatgtatgtcatgaattttagaaatatgtataagttgacaatgtttcaccatatgtactattta |
27565597 |
T |
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| Q |
337 |
cataacacttttgaccatattattctagtaagatataaagacaaataataatatacatatgagatgatgttgaatttatctcatgagtatttacaaaata |
436 |
Q |
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| T |
27565596 |
gataacacttttgaccatattattctagtaagatataaagacaaatgataatatatatatgagatgatgttgaatttatctcataagtattttcaaaata |
27565497 |
T |
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| Q |
437 |
tcaatttacttatgttgagatttgagnnnnnnnntcaactagatgagttttgttttggatacatactttattagagttagatagttgacttggagaaagn |
536 |
Q |
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| T |
27565496 |
tcaatttacttatgttgagatttgag-aaaaaaatcaactagatgagttttgttttggatacataatttgtt----ttggatagttgacttggaaaaag- |
27565403 |
T |
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| Q |
537 |
nnnnnnnnnnngttagatagtggaccttaaatagttggcagctag---caaacgcgtcattgtccc |
599 |
Q |
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| T |
27565402 |
-aaaaaaaaaagttagatagtggaccttaaatagttggcagctagcaacaaacgcgtcattgtccc |
27565338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Complemental strand, 27565245 - 27565209
Alignment:
| Q |
689 |
ttaattttaaatgttttctttttgtatagtgatgatgt |
726 |
Q |
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| T |
27565245 |
ttaattttaaatgttttctttttgtat-gtgatgatgt |
27565209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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