View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_low_31 (Length: 348)

Name: NF3943_low_31
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_low_31
NF3943_low_31
[»] chr3 (19 HSPs)
chr3 (4-348)||(4474865-4475210)
chr3 (268-348)||(4475253-4475334)
chr3 (268-348)||(30173602-30173683)
chr3 (246-348)||(6931090-6931193)
chr3 (267-324)||(41993151-41993208)
chr3 (266-348)||(45405051-45405133)
chr3 (246-348)||(30172074-30172176)
chr3 (268-335)||(30430295-30430363)
chr3 (266-348)||(4304166-4304249)
chr3 (265-312)||(8896054-8896101)
chr3 (268-313)||(27614039-27614084)
chr3 (268-348)||(32618936-32619017)
chr3 (246-348)||(2928097-2928200)
chr3 (246-313)||(4304333-4304400)
chr3 (266-340)||(43907877-43907952)
chr3 (266-320)||(44094321-44094375)
chr3 (272-313)||(45404826-45404867)
chr3 (277-348)||(10821864-10821936)
chr3 (273-348)||(28725661-28725736)
[»] chr1 (18 HSPs)
chr1 (246-348)||(14760024-14760126)
chr1 (268-348)||(16706360-16706441)
chr1 (246-348)||(30748954-30749057)
chr1 (246-348)||(30770405-30770508)
chr1 (275-348)||(16706485-16706559)
chr1 (248-348)||(13765561-13765662)
chr1 (246-340)||(30749098-30749193)
chr1 (246-340)||(30770549-30770644)
chr1 (246-340)||(22679484-22679579)
chr1 (264-314)||(8819017-8819066)
chr1 (246-319)||(30746776-30746849)
chr1 (246-319)||(30768227-30768300)
chr1 (276-340)||(8819350-8819414)
chr1 (269-348)||(15393305-15393384)
chr1 (246-314)||(23485857-23485925)
chr1 (246-320)||(15393148-15393222)
chr1 (270-319)||(22679364-22679413)
chr1 (248-348)||(32800274-32800375)
[»] chr8 (18 HSPs)
chr8 (246-348)||(33892039-33892142)
chr8 (246-348)||(9861571-9861674)
chr8 (246-348)||(33892186-33892289)
chr8 (267-348)||(14148836-14148917)
chr8 (246-339)||(31212443-31212537)
chr8 (268-348)||(10070009-10070090)
chr8 (268-346)||(10069876-10069955)
chr8 (246-320)||(31212316-31212390)
chr8 (268-348)||(8791735-8791816)
chr8 (246-348)||(6906267-6906369)
chr8 (246-340)||(6906431-6906526)
chr8 (246-348)||(8791857-8791960)
chr8 (246-348)||(15229619-15229722)
chr8 (268-348)||(14148421-14148501)
chr8 (273-348)||(29242461-29242537)
chr8 (268-348)||(37037254-37037334)
chr8 (266-313)||(20691296-20691343)
chr8 (266-348)||(27503640-27503723)
[»] chr6 (10 HSPs)
chr6 (268-348)||(7359570-7359650)
chr6 (268-348)||(30519705-30519786)
chr6 (246-348)||(31298874-31298977)
chr6 (246-338)||(13340446-13340539)
chr6 (268-348)||(24704332-24704413)
chr6 (266-348)||(13340593-13340676)
chr6 (246-348)||(34637574-34637677)
chr6 (246-348)||(12289983-12290086)
chr6 (246-310)||(34637428-34637491)
chr6 (278-314)||(10284387-10284423)
[»] chr7 (16 HSPs)
chr7 (246-348)||(12821182-12821284)
chr7 (246-348)||(31198448-31198550)
chr7 (246-348)||(7760611-7760714)
chr7 (246-339)||(9686444-9686538)
chr7 (268-348)||(20164991-20165072)
chr7 (246-342)||(31172331-31172428)
chr7 (268-348)||(31198323-31198404)
chr7 (246-348)||(19105259-19105361)
chr7 (246-348)||(19105405-19105507)
chr7 (246-348)||(6036551-6036654)
chr7 (246-339)||(29635238-29635331)
chr7 (266-348)||(15329880-15329964)
chr7 (268-307)||(3555390-3555429)
chr7 (246-348)||(7760747-7760850)
chr7 (246-343)||(21657454-21657552)
chr7 (269-348)||(31172202-31172281)
[»] chr2 (27 HSPs)
chr2 (268-348)||(981067-981147)
chr2 (246-319)||(16192593-16192666)
chr2 (246-348)||(16127921-16128024)
chr2 (268-348)||(35926749-35926830)
chr2 (268-348)||(35926874-35926955)
chr2 (246-348)||(12874830-12874933)
chr2 (246-313)||(39786319-39786386)
chr2 (247-348)||(16126370-16126471)
chr2 (268-348)||(4921313-4921394)
chr2 (268-345)||(18560521-18560598)
chr2 (246-348)||(32483649-32483752)
chr2 (269-336)||(32945638-32945706)
chr2 (246-348)||(16333299-16333402)
chr2 (246-348)||(27847860-27847963)
chr2 (246-348)||(37897578-37897681)
chr2 (247-348)||(16333154-16333255)
chr2 (246-336)||(32945774-32945863)
chr2 (246-348)||(40152702-40152804)
chr2 (246-348)||(980922-981023)
chr2 (246-347)||(16126223-16126325)
chr2 (247-348)||(16128068-16128169)
chr2 (268-341)||(18509522-18509596)
chr2 (265-307)||(27848024-27848066)
chr2 (268-348)||(26403031-26403112)
chr2 (268-309)||(26859208-26859248)
chr2 (246-291)||(39159301-39159346)
chr2 (246-339)||(39786477-39786569)
[»] chr5 (15 HSPs)
chr5 (246-348)||(25906108-25906210)
chr5 (265-343)||(5161058-5161135)
chr5 (246-348)||(13657699-13657802)
chr5 (268-348)||(12272527-12272607)
chr5 (246-348)||(22297765-22297868)
chr5 (246-348)||(22297912-22298015)
chr5 (246-348)||(25905961-25906064)
chr5 (267-348)||(6843106-6843188)
chr5 (267-348)||(13657573-13657655)
chr5 (246-320)||(29673294-29673367)
chr5 (268-346)||(17047880-17047959)
chr5 (266-348)||(17048005-17048087)
chr5 (270-348)||(24490720-24490799)
chr5 (271-348)||(8086687-8086765)
chr5 (246-324)||(20510470-20510548)
[»] chr4 (14 HSPs)
chr4 (246-320)||(33752712-33752786)
chr4 (246-348)||(54164616-54164719)
chr4 (246-339)||(13552821-13552915)
chr4 (246-334)||(53343708-53343796)
chr4 (246-340)||(28687619-28687713)
chr4 (246-348)||(54164469-54164572)
chr4 (267-348)||(28687485-28687567)
chr4 (267-325)||(34665152-34665210)
chr4 (268-348)||(7513552-7513633)
chr4 (268-348)||(17431110-17431191)
chr4 (267-348)||(33752326-33752406)
chr4 (268-323)||(17430738-17430793)
chr4 (266-348)||(32186618-32186700)
chr4 (268-321)||(34665005-34665058)
[»] scaffold0129 (1 HSPs)
scaffold0129 (264-320)||(6292-6348)
[»] scaffold0025 (1 HSPs)
scaffold0025 (268-348)||(63975-64056)
[»] scaffold0042 (2 HSPs)
scaffold0042 (266-340)||(30716-30790)
scaffold0042 (268-348)||(30336-30416)
[»] scaffold0328 (1 HSPs)
scaffold0328 (267-348)||(11600-11684)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 348
Target Start/End: Original strand, 4474865 - 4475210
Alignment:
Q  4 tacatgaacatcttgagaaagggaaagatataaacca-aggtttgctttatctgatatcaacatttaaaaaagtacgtataaaggtaggtgagacataag 102  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4474865 tacatgaacatcttgagaaagggaaagatataaaccagaggtttgctttatctgatatcaacatttaaaaaagtacgtataaaggtaggtgagacataag 4474964  T
Q  103 taggattgaatattcaagagagattgtttctgattaagtaagtacaattcagatcttnnnnnnnnnnnntgcaattaacgaataataagttacactgtta 202  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||            ||||||| ||| |||| ||||||| ||||||    
T  4474965 taggattgaatattcaagacagattgtttctgattaagtaagtacaattcagatcttaaaaaaaaaaaatgcaatttacggataacaagttacgctgtta 4475064  T
Q  203 atccttttttatggctaaactaatgttcttaaacgaaagggttttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaa 302  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  |||||||    
T  4475065 atccttttttatggctaaactaatgttcttaaacaaaagggttttaaataagtaaaaagtcctcctaaatataccaacatttgattttaattcccctaaa 4475164  T
Q  303 atattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  4475165 atattctttagggttttaatcctttaaaaattttcatctatgaaat 4475210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 4475334 - 4475253
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||| |||||||||||||||||| |  |||||| ||||||||| ||||||||| |||||||||||| |||||||||||    
T  4475334 taaatatatcaacatttgattttaatcactttaaaattttctttaggtttttgatccttctaaaattttttatctatgaaat 4475253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 30173683 - 30173602
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||||| ||||||||||| || ||||||||| ||||||||| ||||||| |||||||||||||  |||||||||||    
T  30173683 taaatataccaatatttgattttagtccccctaaaattttctttaggcttttgatccctctaaaattttatatctatgaaat 30173602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 6931193 - 6931090
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc-ctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||| || |  ||||| |||  ||||| |||||||| |||||||||||||||| | ||    
T  6931193 ttaaataagtaaatagtcctcttaaatatactaacatttgattttagtccctttaaaacatttcttaggtttttgatctctctaaaatttttcatttttg 6931094  T
Q  345 aaat 348  Q
    ||||    
T  6931093 aaat 6931090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 41993208 - 41993151
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc 324  Q
    ||||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||    
T  41993208 ttaaatatatcaatatttgattttaatctccctaaaatattttttaggcttttgatcc 41993151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 45405133 - 45405051
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||| |||| |  |||| ||||||||| |||||||||||    
T  45405133 cttaaatatactaacatttgattttagtccccctaaaatattctttaggcttttagtccctccaaaattttt-atctatgaaat 45405051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 30172074 - 30172176
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatga 345  Q
    |||||||||||||   ||| | |||||||| ||||||||||||||| || || |||||||||||||||| ||||| |  |  ||||||||||||| ||||    
T  30172074 ttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccccttaaaatattctttaggtttttggttttacaaaatttttcatccatga 30172173  T
Q  346 aat 348  Q
    |||    
T  30172174 aat 30172176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 30430295 - 30430363
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttt 335  Q
    |||||||||||||||||||||||| |  | ||||||||||||||||| ||||| | |||||||||||||    
T  30430295 taaatataccaacatttgattttagttcctctaaaatattctttaggcttttggtccctctaaaatttt 30430363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 4304166 - 4304249
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||||| ||  |||||||||||  ||| | ||||| ||| ||||||||||| ||| ||||||||    
T  4304166 cttaaatataccaacatttgattttagtcctcctaaaatatttcttaagcttttggtccttctaaaattttacatatatgaaat 4304249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 8896101 - 8896054
Alignment:
Q  265 tcttaaatataccaacatttgattttaatctccctaaaatattcttta 312  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  8896101 tcttaaatacaccaacatttaattttagtctccctaaaatattcttta 8896054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 27614039 - 27614084
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttag 313  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  27614039 taaatataccaacatttaattttagtctccataaaatattctttag 27614084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 32619017 - 32618936
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatgaaat 348  Q
    |||||||| ||||||||||||||| |||  |||||||||| |||||  |||| | |||||||||||||||||| ||| ||||    
T  32619017 taaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctctaaaatttttcatttataaaat 32618936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 2928097 - 2928200
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    |||||||||||||   ||||| ||||||||||||||||||||| || || | ||||||| ||| ||||| ||||| | |||| |||||||| |||  |||    
T  2928097 ttaaataagtaaatggtcctcctaaatataccaacatttgattctagtccctctaaaattttccttaggcttttggtccctccaaaattttccattcatg 2928196  T
Q  345 aaat 348  Q
    ||||    
T  2928197 aaat 2928200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 4304400 - 4304333
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttag 313  Q
    ||||||||||||| | ||  | |||||||||||||||||||||||| || | ||||||||||| ||||    
T  4304400 ttaaataagtaaataatctccctaaatataccaacatttgattttagtccctctaaaatattcattag 4304333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 43907952 - 43907877
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagg-gttttgatcctctaaaatttttcatc 340  Q
    ||||||||||| || ||||||||||| || |||||||||||| ||||||  ||||| ||||  |||||||||||||    
T  43907952 cttaaatatactaatatttgattttagtccccctaaaatattttttaggttttttgttccttcaaaatttttcatc 43907877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 44094375 - 44094321
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggttttg 320  Q
    |||||||||| ||||||||||||||| |||||  ||||||||  |||||||||||    
T  44094375 cttaaatatatcaacatttgattttagtctcctgaaaatatttcttagggttttg 44094321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 45404826 - 45404867
Alignment:
Q  272 tataccaacatttgattttaatctccctaaaatattctttag 313  Q
    ||||| |||||||||||||| |||||||||||||||| ||||    
T  45404826 tatacaaacatttgattttagtctccctaaaatattccttag 45404867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 10821864 - 10821936
Alignment:
Q  277 caacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||| |||||| || || ||||||||| |||||| ||||| ||| |||||||  |||||||||||||||    
T  10821864 caacattttattttagtcaccgtaaaatattttttaggcttttggtccctctaaaaaatttcatctatgaaat 10821936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 28725736 - 28725661
Alignment:
Q  273 ataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||||| |||||| ||||||||| ||||| ||||| | |||| ||||  ||||||| |||||||    
T  28725736 ataccaacatttgattttagtctccc-aaaatattcattaggtttttggtccctccaaaaaatttcatccatgaaat 28725661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 14760126 - 14760024
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatga 345  Q
    |||||||||||||   ||| ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||| ||||||||||||||||||||    
T  14760126 ttaaataagtaaatgatccccttaaatataccaacatttgattttaatccccctaaaatattttttaggcttttggtcccctaaaatttttcatctatga 14760027  T
Q  346 aat 348  Q
    |||    
T  14760026 aat 14760024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 16706360 - 16706441
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| || | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||    
T  16706360 taaatataccaacatttgattttagtccctctaaaattttctttaggcttttggtccttctaaaatttttcatctatgaaat 16706441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 30748954 - 30749057
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    |||||||||||||   ||||| ||||||||| || ||||||||||| || ||||||||||||||||||| ||||| | |||  |||||||||||||||||    
T  30748954 ttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcatctatg 30749053  T
Q  345 aaat 348  Q
    ||||    
T  30749054 aaat 30749057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 30770405 - 30770508
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    |||||||||||||   ||||| ||||||||| || ||||||||||| || ||||||||||||||||||| ||||| | |||  |||||||||||||||||    
T  30770405 ttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcatctatg 30770504  T
Q  345 aaat 348  Q
    ||||    
T  30770505 aaat 30770508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 16706559 - 16706485
Alignment:
Q  275 accaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||| | ||||||||||||| ||||||| ||||    
T  16706559 accaacatttgattttagtccccctaaaatattctttaggtttttggtccctctaaaattttccatctatcaaat 16706485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 248 - 348
Target Start/End: Original strand, 13765561 - 13765662
Alignment:
Q  248 aaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaa 346  Q
    ||||||||||| | ||  | |||||||||||||||||||||||| || || |||||||||||||||| ||||| | ||| ||| ||||||||| ||||||    
T  13765561 aaataagtaaataatctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttggtccctttaatatttttcatttatgaa 13765660  T
Q  347 at 348  Q
    ||    
T  13765661 at 13765662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 30749193 - 30749098
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatc 340  Q
    ||||||| ||||| | ||||| |||||||| |||||||||||||||||  | |||||||||| |||| | |||| | |||||||||||||||||||    
T  30749193 ttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaatttttcatc 30749098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 30770644 - 30770549
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatc 340  Q
    ||||||| ||||| | ||||| |||||||| |||||||||||||||||  | |||||||||| |||| | |||| | |||||||||||||||||||    
T  30770644 ttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaatttttcatc 30770549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 22679579 - 22679484
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatc 340  Q
    |||||||||||||   ||| | |||||||||||||||||||||||| || | ||||||||||  ||||| ||||| | |||||||| |||||||||    
T  22679579 ttaaataagtaaacgatccccctaaatataccaacatttgattttagtccctctaaaatatttgttaggtttttggtccctctaaattttttcatc 22679484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 8819017 - 8819066
Alignment:
Q  264 ctcttaaatataccaacatttgattttaatctccctaaaatattctttagg 314  Q
    ||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  8819017 ctcttaaatatat-aacatttgattttaatctccctaaaatattttttagg 8819066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 30746776 - 30746849
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt 319  Q
    |||||||||||||   ||| ||||||||||| || ||||||||||| | ||| |||||||||||||||| ||||    
T  30746776 ttaaataagtaaatggtccccttaaatatactaatatttgattttagtttccttaaaatattctttaggttttt 30746849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 30768227 - 30768300
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt 319  Q
    |||||||||||||   ||| ||||||||||| || ||||||||||| | ||| |||||||||||||||| ||||    
T  30768227 ttaaataagtaaatggtccccttaaatatactaatatttgattttagtttccttaaaatattctttaggttttt 30768300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 8819414 - 8819350
Alignment:
Q  276 ccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatc 340  Q
    |||||||||||||||| | ||| |||||||||| ||||| |||||  |||| |||||||||||||    
T  8819414 ccaacatttgattttagtatccataaaatattccttaggtttttggccctccaaaatttttcatc 8819350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 15393384 - 15393305
Alignment:
Q  269 aaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc-ctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||||||| | || |||||||||||| |||||| ||||| || || | ||||||||||| ||||||||    
T  15393384 aaatataccaacatttgatttcagtccccctaaaatatt-tttaggtttttggtctctttgaaatttttcatttatgaaat 15393305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 23485925 - 23485857
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagg 314  Q
    |||||||||||||   ||||| |||| ||||||| |||||||||||||  | |||||||||||||||||    
T  23485925 ttaaataagtaaatgatcctcctaaacataccaaaatttgattttaattcctctaaaatattctttagg 23485857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 15393148 - 15393222
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttg 320  Q
    ||||||||||||| | |||||  ||||||||||| |||| |||||  || ||||||||||||| ||||| |||||    
T  15393148 ttaaataagtaaatagtcctcacaaatataccaatatttaattttcgtccccctaaaatattccttaggcttttg 15393222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 22679364 - 22679413
Alignment:
Q  270 aatataccaacatttgattttaatctccctaaaatattctttagggtttt 319  Q
    |||||| |||||| ||||||||||| ||||||||||| ||||||| ||||    
T  22679364 aatatatcaacatatgattttaatccccctaaaatatcctttaggttttt 22679413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 32800375 - 32800274
Alignment:
Q  248 aaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaa 346  Q
    ||||||||||| | |||   |||||||| ||| ||||||||||||||  | ||||||||| | |||| ||||| | |||||||||||||| || ||||||    
T  32800375 aaataagtaaatagtcccactaaatatatcaatatttgattttaatcctcataaaatattatgtaggtttttggtccctctaaaattttttatgtatgaa 32800276  T
Q  347 at 348  Q
    ||    
T  32800275 at 32800274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 33892039 - 33892142
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatg 344  Q
    ||||||||||||| | | |||||||||||||||||||||||||||| || ||  ||||||||||||||| ||||| ||| ||||||| ||||||||||||    
T  33892039 ttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaaaaattttcatctatg 33892138  T
Q  345 aaat 348  Q
    ||||    
T  33892139 aaat 33892142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 9861571 - 9861674
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||||| |||||||| ||||||||||||||| || |  |||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  9861571 ttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccctataaaatattctttaggcttttggtccctctaaaatttttcatttatg 9861670  T
Q  345 aaat 348  Q
    ||||    
T  9861671 aaat 9861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 33892289 - 33892186
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | || ||||||||||||||||||||||||||| || |  |||||||||||||| | ||||| | ||||||||||||||||| ||||    
T  33892289 ttaaataagtaaacaatcttcttaaatataccaacatttgattttagtccctttaaaatattctttatgtttttggtccctctaaaatttttcatttatg 33892190  T
Q  345 aaat 348  Q
    ||||    
T  33892189 aaat 33892186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 14148917 - 14148836
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||||||||||| || |||||| ||||| |||||| ||||| ||||| |||||||||||| ||||||||    
T  14148917 ttaaatataccaacatttgattttagtccccctaacatattttttaggcttttggtcctccaaaatttttcatatatgaaat 14148836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 31212537 - 31212443
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttg-atcctctaaaatttttcat 339  Q
    ||||||||||||| | ||  | |||||||||||||||||||||||| || || |||||||||||||||| |||||  ||||||||||||||||||    
T  31212537 ttaaataagtaaatagtctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttgtttcctctaaaatttttcat 31212443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 10070090 - 10070009
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||||| |||| |||||||||  ||||||||||| |||||| ||||| | ||||||||||||||||||||||||||    
T  10070090 taaatataccaatattttattttaatcctcctaaaatattttttaggtttttggtccctctaaaatttttcatctatgaaat 10070009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 10069876 - 10069955
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaa 346  Q
    ||||| ||||||||||| ||||||| | | ||||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  10069876 taaatgtaccaacatttaattttaacccctctaaaatattctttaggattttggtccttctaaaatttttcatctatgaa 10069955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 31212316 - 31212390
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttg 320  Q
    ||||||||||||| | ||| |||||||||| ||||||||||||||| || || |||||||||||||||| |||||    
T  31212316 ttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatattctttaggcttttg 31212390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 8791735 - 8791816
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||| ||||||||||||||| || ||| ||||||||  ||||| ||||| ||| ||||||||||||||||||||||||    
T  8791735 taaatatatcaacatttgattttactcaccccaaaatatttgttaggtttttggtccctctaaaatttttcatctatgaaat 8791816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 6906267 - 6906369
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||| | ||||||||||||||||||| |||| || || |||||||||| ||||| ||||| ||| || ||||||||||||| |||    
T  6906267 ttaaataagtaaatagtccccctaaatataccaacatttga-tttagtccccataaaatattccttaggcttttggtccttccaaaatttttcatccatg 6906365  T
Q  345 aaat 348  Q
    ||||    
T  6906366 aaat 6906369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 6906526 - 6906431
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatc 340  Q
    |||||||||||||   ||| | |||||||||||||||||||||||| || || ||||||||| |||||| ||||||| |||| |||| ||||||||    
T  6906526 ttaaataagtaaacggtccccctaaatataccaacatttgattttagtccccataaaatattttttaggcttttgatccctccaaaaattttcatc 6906431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 8791960 - 8791857
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | | ||||||||||||| |||||||||||||||||  | |||||||||  ||||| |||| || |||||| | ||||| |||||||    
T  8791960 ttaaataagtaaatagttctcttaaatatactaacatttgattttaatcctcataaaatatttcttaggttttttatccctctacatttttttatctatg 8791861  T
Q  345 aaat 348  Q
    ||||    
T  8791860 aaat 8791857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 15229619 - 15229722
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | | | ||||||||||||||||||| |||||| || |  ||||||||||||| |  ||||||| |||||||||||||| || ||||    
T  15229619 ttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatattcttttgacttttgatccctctaaaattttttatttatg 15229718  T
Q  345 aaat 348  Q
    ||||    
T  15229719 aaat 15229722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 14148421 - 14148501
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    |||||||| ||||||||||||||| ||  |||||||||||  ||||| ||||  | | |||||| ||||||||||||||||    
T  14148421 taaatatatcaacatttgattttagtcctcctaaaatatttcttaggtttttagttccctaaaaattttcatctatgaaat 14148501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 29242461 - 29242537
Alignment:
Q  273 ataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatgaaat 348  Q
    |||||||||||| |||||| || | ||||||||||| ||||| |||| | |||||||||| |||| |||||||||||    
T  29242461 ataccaacattttattttagtccctctaaaatattcattaggcttttggttcctctaaaagtttttatctatgaaat 29242537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 37037334 - 37037254
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    ||||||| |||||||||||||||| || | ||||||||||| |||   ||||| |||  |||||||||||||| |||||||    
T  37037334 taaatattccaacatttgattttagtccctctaaaatattccttatacttttggtcccttaaaatttttcatccatgaaat 37037254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 20691296 - 20691343
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttag 313  Q
    |||||||||||||| ||||||||||| || ||||||||||||| ||||    
T  20691296 cttaaatataccaaaatttgattttattccccctaaaatattccttag 20691343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 27503723 - 27503640
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||| ||| ||||||||||| | ||| ||||||||| |||||| ||||| | ||||| |||||||||||  |||||||    
T  27503723 cttaaatatatcaatatttgattttagtttccataaaatattatttaggcttttggtccctctgaaatttttcattcatgaaat 27503640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 7359650 - 7359570
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| || |||||||||||| |||||| ||||||||| | |||||||| ||||||||||||    
T  7359650 taaatataccaacatttgattttactccccctaaaatattatttaggcttttgatcccccaaaattttccatctatgaaat 7359570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 30519705 - 30519786
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||||||||  ||||||||| |||| | ||||| | |||||||||||||||||| |||||||    
T  30519705 taaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaaaatttttcatccatgaaat 30519786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 31298977 - 31298874
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | |||  ||||||||||||| ||||||||||| |  | ||||||||||||||||| ||||| | |||||||| ||||||||||| |    
T  31298977 ttaaataagtaaatagtccctttaaatataccaatatttgattttagttcctctaaaatattctttaggcttttgctccctctaaattttttcatctacg 31298878  T
Q  345 aaat 348  Q
    ||||    
T  31298877 aaat 31298874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 13340446 - 13340539
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttca 338  Q
    ||||||||||||| | ||| |||||||||||||||||||||||||| || |  ||||| |||||||||| ||||| | |||| |||||||||||    
T  13340446 ttaaataagtaaatagtccccttaaatataccaacatttgattttagtccctataaaacattctttaggcttttggtccctccaaaatttttca 13340539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 24704332 - 24704413
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||| | ||||| | ||||||||||||| || |||||||||    
T  24704332 taaatataccaatatttgattttagtctccctaaaatattatttatgcttttggtccctctaaaattttccaactatgaaat 24704413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 13340676 - 13340593
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    ||||||||||| |||||||||||||| || || |||||||||||||||| ||||| | |||||||||  |||||| ||||||||    
T  13340676 cttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaaaaaatttcatttatgaaat 13340593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 34637677 - 34637574
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||  | |||||||| ||||||||||||||| |  ||||||||||||||| ||| ||||| | ||||||||||||||||| || |    
T  34637677 ttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaaaatttttcatttaag 34637578  T
Q  345 aaat 348  Q
    ||||    
T  34637577 aaat 34637574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 12289983 - 12290086
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||  | ||||||||||||||||||||||||  || ||||||||||||  |||| ||||||| |||  |||| |||||||| |||    
T  12289983 ttaaataagtaaatagtctccctaaatataccaacatttgattttagcctgcctaaaatattccctaggtttttgatcccttcaaaaattttcatccatg 12290082  T
Q  345 aaat 348  Q
    ||||    
T  12290083 aaat 12290086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 34637428 - 34637491
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctt 310  Q
    ||||||||||||| | ||  | |||||||||||||||||||||||| || |||||||||||||||    
T  34637428 ttaaataagtaaatagtctccataaatataccaacatttgattttagtc-ccctaaaatattctt 34637491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 10284423 - 10284387
Alignment:
Q  278 aacatttgattttaatctccctaaaatattctttagg 314  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  10284423 aacatttgattttaatctccttaaaatattctatagg 10284387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 12821182 - 12821284
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatg 344  Q
    |||||||||||||   ||| ||||||||||||||| ||||||||||||| |||||||||||| |||||| |||| | |||||||||| ||||||||||||    
T  12821182 ttaaataagtaaatggtccccttaaatataccaacgtttgattttaatccccctaaaatattttttaggcttttggttcctctaaaa-ttttcatctatg 12821280  T
Q  345 aaat 348  Q
    ||||    
T  12821281 aaat 12821284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 31198550 - 31198448
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatga 345  Q
    ||||||||||||| | |||  ||||||||||||||||||||||||| |   |||||||||||  ||||| |||||  |||||||||||||||||||||||    
T  31198550 ttaaataagtaaatagtccctttaaatataccaacatttgattttagttctcctaaaatatttcttaggcttttggccctctaaaatttttcatctatga 31198451  T
Q  346 aat 348  Q
    |||    
T  31198450 aat 31198448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 7760611 - 7760714
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||||  ||||||||||| ||| |||||||| || ||||||||||||||||||| ||||| | |||| |||||| |||||| |||    
T  7760611 ttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatattctttaggcttttggtccctccaaaattgttcatccatg 7760710  T
Q  345 aaat 348  Q
    ||||    
T  7760711 aaat 7760714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 9686538 - 9686444
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcat 339  Q
    ||||||||||||| | ||||| |||||||| ||| ||||||||||| || || ||||||||| |||||| ||||| ||| |||||||||||||||    
T  9686538 ttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcat 9686444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 20165072 - 20164991
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| || | ||||||||||| ||||| ||||||| |||||| ||||||  |||||||||||    
T  20165072 taaatataccaacatttgattttagtccctctaaaatattcattaggtttttgatccctctacaattttctatctatgaaat 20164991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 31172428 - 31172331
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatcta 342  Q
    |||||||||||||   |||  |||||||||| |||||||||||||||||  ||||||||||| |||||| ||||| | ||||||||| ||||||||||    
T  31172428 ttaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaaaaattttcatcta 31172331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 31198323 - 31198404
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| ||   |||||||||| |||||| | ||||| ||||||||||||||||| ||||||||    
T  31198323 taaatataccaacatttgattttagtccttctaaaatattttttaggttattgatccctctaaaatttttcatttatgaaat 31198404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 19105259 - 19105361
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||||  ||| | ||||||||| |||||| ||||||| || | ||||||||||||||||| ||||| | |||||| |||||||||| ||||    
T  19105259 ttaaataagtaaaagatccgcataaatatactaacattcgattttagtc-ctctaaaatattctttaggcttttggtccctctataatttttcatttatg 19105357  T
Q  345 aaat 348  Q
    ||||    
T  19105358 aaat 19105361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 19105507 - 19105405
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||| | ||||||||||||| |||||||||| || || |||| ||||||||||| ||||| | ||||||||| ||||||| ||||    
T  19105507 ttaaataagtaaatagtccccctaaatataccaacttttgattttagtccccttaaactattctttaggcttttggtccctctaaaa-ttttcatttatg 19105409  T
Q  345 aaat 348  Q
    ||||    
T  19105408 aaat 19105405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 6036551 - 6036654
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc-ctctaaaatttttcatctatg 344  Q
    ||||||||||||| | | | | |||||||| ||||||||||||||| || || ||||||| | |||||| |||||  | |||||||||||||||| ||||    
T  6036551 ttaaataagtaaatagttcccctaaatatatcaacatttgattttagtccccttaaaatagtttttaggtttttggcctctctaaaatttttcatttatg 6036650  T
Q  345 aaat 348  Q
    ||||    
T  6036651 aaat 6036654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 29635238 - 29635331
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcat 339  Q
    |||||||||||||   ||| | |||||||| ||||||||||||||| || ||||||||||||| ||||  ||||| | |||||||||||||||||    
T  29635238 ttaaataagtaaatggtccccctaaatatatcaacatttgattttagtc-ccctaaaatattccttagacttttggtccctctaaaatttttcat 29635331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 15329880 - 15329964
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatatt-ctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||||| || ||| || ||||| ||| ||| ||||| ||| || |||| ||||||||||||||||    
T  15329880 cttaaatataccaacatttgattttagtcccccaaagatattacttaaggtttttggtccatccaaaaattttcatctatgaaat 15329964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 3555390 - 3555429
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatatt 307  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  3555390 taaatataccaacatttgattttagtccccctaaaatatt 3555429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 7760850 - 7760747
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | | | | |||||||||||||||||||||||| || |  |||||||||  ||||| ||||| | |||| |||| |||||||| |||    
T  7760850 ttaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctccaaaaattttcatccatg 7760751  T
Q  345 aaat 348  Q
    ||||    
T  7760750 aaat 7760747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 343
Target Start/End: Complemental strand, 21657552 - 21657454
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctat 343  Q
    ||||||||||||| | ||  | ||||||||| |||||||||| |||  | || |||||||||| ||| | ||||||| |||||||||||||| ||||||    
T  21657552 ttaaataagtaaatagtctccctaaatatactaacatttgatattagcccccttaaaatattccttacgcttttgatccctctaaaatttttaatctat 21657454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 31172202 - 31172281
Alignment:
Q  269 aaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    ||||||| ||||||||||||||| || |  ||||||||| |||||  ||||||| |||||||| |||||||| ||||||||    
T  31172202 aaatatatcaacatttgattttactc-ctataaaatattttttagacttttgatccctctaaagtttttcatttatgaaat 31172281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 981147 - 981067
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||    
T  981147 taaatataccaacatttgattttagtc-ccctaaaatattctttaggcttttggtccctctaaaatttttcatttatgaaat 981067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 16192666 - 16192593
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt 319  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||    
T  16192666 ttaaataagtaaatagtcctcttaaatatatcaacatttgattttagtctccctaaaatattccttaggctttt 16192593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 16127921 - 16128024
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||| ||||||||||||||||||| |||||| ||  ||||||||||| | |||| ||||| | ||||||||||||||||| ||||    
T  16127921 ttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaaaatttttcatttatg 16128020  T
Q  345 aaat 348  Q
    ||||    
T  16128021 aaat 16128024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 35926749 - 35926830
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||| |||| | ||||||||||  |||||| ||||||||    
T  35926749 taaatataccaacatttgattttagtctccataaaatattttttaggtttttagttcctctaaaacatttcatttatgaaat 35926830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 35926955 - 35926874
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttga-tcctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| ||||  ||||||||| |||||| |||||| | ||||||||||||| || ||||||||    
T  35926955 taaatataccaacatttgattttagtctcaataaaatattttttaggtttttgatttctctaaaattttttatttatgaaat 35926874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 12874933 - 12874830
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | || ||  ||||||||||| ||||||||||| || | |||||||||| |||||| ||||| | ||||||||| ||||||| ||||    
T  12874933 ttaaataagtaaatagtcttcccaaatataccaatatttgattttagtccctctaaaatattatttaggtttttggtccctctaaaagttttcatttatg 12874834  T
Q  345 aaat 348  Q
    ||||    
T  12874833 aaat 12874830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 39786319 - 39786386
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttag 313  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||| |||| ||||||| ||| ||||    
T  39786319 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttag 39786386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 16126471 - 16126370
Alignment:
Q  247 taaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtt-ttgatcctctaaaatttttcatctatga 345  Q
    ||||||||||||   ||||| |||||||||||| ||||||||||||||  |||||||||||||||||| || | | || ||||| ||||||||| |||||    
T  16126471 taaataagtaaatgatcctcataaatataccaaaatttgattttaatc-gcctaaaatattctttaggtttctggttcttctaacatttttcatttatga 16126373  T
Q  346 aat 348  Q
    |||    
T  16126372 aat 16126370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 4921394 - 4921313
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttag-ggttttgatcctctaaaatttttcatctatgaaat 348  Q
    |||||||| |||||||||||||||||| || ||||||||| |||||   |||||  ||||||||| ||||||||||||||||    
T  4921394 taaatatatcaacatttgattttaatccccttaaaatattttttagattttttgtccctctaaaaattttcatctatgaaat 4921313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 18560521 - 18560598
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatga 345  Q
    |||||||| ||||||||||||||| ||||| |||||||||| ||||  |||||||||  | |||||||||||| ||||    
T  18560521 taaatatatcaacatttgattttagtctccttaaaatattccttagacttttgatccagtgaaatttttcatccatga 18560598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 32483649 - 32483752
Alignment:
Q  246 ttaaataagtaaa-aattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctat 343  Q
    ||||||||||||| ||||||| ||||||||||  |||||||||||||||  || ||||||||| |||||| |||| | | |||||||| ||||||| |||    
T  32483649 ttaaataagtaaataattcct-ttaaatatactgacatttgattttaattcccataaaatattttttaggcttttggtttctctaaaaattttcatttat 32483747  T
Q  344 gaaat 348  Q
    |||||    
T  32483748 gaaat 32483752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 32945638 - 32945706
Alignment:
Q  269 aaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaattttt 336  Q
    ||||||||||||||||||||||| || || ||||||||| |||||  ||||||| ||||||||||||||    
T  32945638 aaatataccaacatttgattttagtccccataaaatattatttagatttttgatccctctaaaattttt 32945706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 16333402 - 16333299
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattcttta-gggttttgatcctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||| ||||||||||||||||||| |||||||||  |||||| |||| | || |  |||||  |||||||| |||||||| ||||    
T  16333402 ttaaataagtaaacagtccccttaaatataccaacatttaattttaatcctcctaaattattatgtacgttttttgtccctctaaattttttcatttatg 16333303  T
Q  345 aaat 348  Q
    ||||    
T  16333302 aaat 16333299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 27847860 - 27847963
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||| | |||||||||||||||||||||||| ||  | |||||||||| ||| | ||||| | ||| ||||||| |||||||||     
T  27847860 ttaaataagtaaatagtccccataaatataccaacatttgattttagtccacttaaaatattccttaagtttttggtccctttaaaattattcatctatt 27847959  T
Q  345 aaat 348  Q
    ||||    
T  27847960 aaat 27847963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 37897578 - 37897681
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||| ||| |  |||| |||||| ||||||||||||||||| || | ||||||||||| ||||| ||| | | ||||||||| |||||||| |||    
T  37897578 ttaaataaggaaatagccctcctaaatagaccaacatttgattttactccctctaaaatattccttaggttttcggtccctctaaaaattttcatccatg 37897677  T
Q  345 aaat 348  Q
    ||||    
T  37897678 aaat 37897681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 348
Target Start/End: Original strand, 16333154 - 16333255
Alignment:
Q  247 taaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtt-ttgatcctctaaaatttttcatctatga 345  Q
    ||||||||||||   ||||| |||||||| ||| ||||||||||||||  |||||||||||||||||| || | | || ||||| ||||||||| |||||    
T  16333154 taaataagtaaatgatcctcataaatatatcaaaatttgattttaatc-gcctaaaatattctttaggtttctggttcttctaacatttttcatttatga 16333252  T
Q  346 aat 348  Q
    |||    
T  16333253 aat 16333255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 336
Target Start/End: Complemental strand, 32945863 - 32945774
Alignment:
Q  246 ttaaataagtaaa-aattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc-ctctaaaattttt 336  Q
    ||||||||||||| |||||||   ||||||||||| ||||||||||||| ||| ||||||||||| |||| |||| ||| |||| ||||||||    
T  32945863 ttaaataagtaaataattcct---aaatataccaaaatttgattttaatttccataaaatattctctaggttttttatctctctcaaattttt 32945774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 40152702 - 40152804
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttag-ggttttgatcctctaaaatttttcatctatg 344  Q
    |||||||||||||   |||| |||||||||| ||||||| |||||| ||  |||||||||||| ||||   |||||  |||| |||||||||||||||||    
T  40152702 ttaaataagtaaatggtcct-ttaaatatacaaacattttattttagtcctcctaaaatattccttagattttttgtccctccaaaatttttcatctatg 40152800  T
Q  345 aaat 348  Q
    ||||    
T  40152801 aaat 40152804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 980922 - 981023
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatga 345  Q
    |||||||||||||   |||  ||||||||| ||||||||||||||| || | ||||||||||  ||||| ||||| ||| ||||||  ||| ||||||||    
T  980922 ttaaataagtaaatgatccctttaaatatatcaacatttgattttagtc-ctctaaaatatttcttaggcttttggtcccctaaaaaattttatctatga 981020  T
Q  346 aat 348  Q
    |||    
T  981021 aat 981023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 347
Target Start/End: Original strand, 16126223 - 16126325
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattcttta-gggttttgatcctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||| ||||||||||||||||||| |||||| ||  |||||| |||| | || |  |||||  |||||||| |||||||| ||||    
T  16126223 ttaaataagtaaacagtccccttaaatataccaacatttaattttagtcctcctaaattattatgtacgttttttgtccctctaaattttttcatttatg 16126322  T
Q  345 aaa 347  Q
    |||    
T  16126323 aaa 16126325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 16128169 - 16128068
Alignment:
Q  247 taaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggtt-ttgatcctctaaaatttttcatctatga 345  Q
    ||||||||||||   ||||| | |||||||||| |||||||||||||| |  |||||||||||||||| || | | || ||||| ||||||||| |||||    
T  16128169 taaataagtaaatgatcctcgtgaatataccaaaatttgattttaatc-ctttaaaatattctttaggtttctggttcttctaacatttttcatttatga 16128071  T
Q  346 aat 348  Q
    |||    
T  16128070 aat 16128068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 18509522 - 18509596
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatct 341  Q
    |||||||||||||||||||||||| || | ||||||||||| || || ||||| | |||| |||||||| |||||    
T  18509522 taaatataccaacatttgattttagtccctctaaaatattcctttggtttttggtccctccaaaattttccatct 18509596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 27848066 - 27848024
Alignment:
Q  265 tcttaaatataccaacatttgattttaatctccctaaaatatt 307  Q
    ||||||||||||||||||||||||||| ||||  |||||||||    
T  27848066 tcttaaatataccaacatttgattttagtctctttaaaatatt 27848024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 26403031 - 26403112
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc-ctctaaaatttttcatctatgaaat 348  Q
    ||||||||  || ||||||||||| || ||||||||||||||| ||| ||||| ||  |||||||||||||||  |||||||    
T  26403031 taaatatattaaaatttgattttagtccccctaaaatattcttcaggcttttggtctgtctaaaatttttcattaatgaaat 26403112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 26859208 - 26859248
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattct 309  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  26859208 taaatataccaacatttgattttagtc-ccctaaaatattct 26859248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 39159346 - 39159301
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgatttta 291  Q
    |||||||||| || | ||||||||||||||| ||||||||||||||    
T  39159346 ttaaataagttaatagtcctcttaaatatactaacatttgatttta 39159301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 39786569 - 39786477
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcat 339  Q
    ||||||||||||| | || || ||||||||||| ||||| |||||| || |||||||||||| |||||  ||||| || | | |||||||||||    
T  39786569 ttaaataagtaaatagtc-tcataaatataccagcatttaattttagtccccctaaaatattttttagaattttggtcttttcaaatttttcat 39786477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 25906210 - 25906108
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||||| |||||||| ||||||||||||||| || |||| |||||||||||||| ||||| | ||||| ||||||||||| ||||    
T  25906210 ttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatattctttaggcttttggtccctct-aaatttttcatttatg 25906112  T
Q  345 aaat 348  Q
    ||||    
T  25906111 aaat 25906108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 5161135 - 5161058
Alignment:
Q  265 tcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctat 343  Q
    |||||||||||  |||||||||||||| || |||||||||||| |||||| |||||||||||||||| |||||||||||    
T  5161135 tcttaaatatattaacatttgattttactc-ccctaaaatattatttaggtttttgatcctctaaaaattttcatctat 5161058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 13657802 - 13657699
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | |||||| |||||||| |||||||||||||| | | ||||||||||| ||| || ||||| | ||||||||| ||||||| ||||    
T  13657802 ttaaataagtaaatagtcctctgaaatatactaacatttgattttagttttcctaaaatattattttggcttttgttccctctaaaaattttcatgtatg 13657703  T
Q  345 aaat 348  Q
    ||||    
T  13657702 aaat 13657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 12272527 - 12272607
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||||| |||| |||||||| | |||||| ||||||||||  ||||  ||||||| |||||||    
T  12272527 taaatataccaacatttgattttagtctctctaaaataatttttaggtttttgatccttaaaaaaatttcatccatgaaat 12272607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 22297765 - 22297868
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | |||   |||||||| ||||||||||||||| || | |||||||||| |||||| ||||| | ||| |||||||| |||||||||    
T  22297765 ttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccctttaaaatttctcatctatg 22297864  T
Q  345 aaat 348  Q
    ||||    
T  22297865 aaat 22297868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 22298015 - 22297912
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    |||||||||||||   ||| | ||||||||| |||||||||||||| || || ||||||||| |||| | ||||| | ||||||||||||||||| ||||    
T  22298015 ttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatattttttaagtttttggtccctctaaaatttttcatttatg 22297916  T
Q  345 aaat 348  Q
    ||||    
T  22297915 aaat 22297912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 25905961 - 25906064
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    |||||||||||||   ||| |||| ||||||||||||||||||||| || ||||||| ||||   |||| ||||| | |||||||||||||||||||||     
T  25905961 ttaaataagtaaatgatccccttatatataccaacatttgattttagtccccctaaagtatttcataggcttttggtccctctaaaatttttcatctata 25906060  T
Q  345 aaat 348  Q
    ||||    
T  25906061 aaat 25906064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 6843106 - 6843188
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||||| |||||||||||||| ||  |||| ||||||| ||||  ||||| ||| ||||||||||||||||||||||||    
T  6843106 ttaaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaaaatttttcatctatgaaat 6843188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 13657573 - 13657655
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc-ctctaaaatttttcatctatgaaat 348  Q
    |||||||||| |||||||||||||| |  | ||||||||||||||||  ||||| || ||||||||  |||||||||||||||    
T  13657573 ttaaatatacaaacatttgattttagttcctctaaaatattctttagacttttggtctctctaaaaaatttcatctatgaaat 13657655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 29673294 - 29673367
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttg 320  Q
    |||||||||||||   ||| |||||||||||||||||||||||||| ||  ||||||||||| |||||| |||||    
T  29673294 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatatt-tttaggattttg 29673367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 17047880 - 17047959
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaa 346  Q
    |||||||||||| |||||||||||  |  ||||||||||||||||   ||||| | ||||||||||||||||| ||||||    
T  17047880 taaatataccaatatttgattttagccctcctaaaatattctttaaacttttggtccctctaaaatttttcatttatgaa 17047959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 17048087 - 17048005
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||||||| |||| || |||||||| ||| |||||| |||| | ||||||||||  |||||||||| ||||    
T  17048087 cttaaatataccaacatttga-tttagtccccctaaaagattttttaggcttttggttcctctaaaaaatttcatctattaaat 17048005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 24490720 - 24490799
Alignment:
Q  270 aatataccaacatttgattttaatctccctaaaatat-tctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||||||| |||| ||||||||| |||| ||  ||| |  |||| ||||||| |||||||||||||    
T  24490720 aatataccaacatttgattttagtctctctaaaatatctcttaagtttttggtccctccaaaatttctcatctatgaaat 24490799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 8086765 - 8086687
Alignment:
Q  271 atataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||| || |||||||||||||| |||||||||||| |||||  ||||| | |||| |||| |||||||| |||||||    
T  8086765 atatacaaatatttgattttaatccccctaaaatattttttagatttttggtccctcaaaaagttttcatccatgaaat 8086687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 20510548 - 20510470
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc 324  Q
    ||||| ||||||| | ||||| ||||||||  |||||||||||||| || |  ||||||||| |||||| |||||||||    
T  20510548 ttaaaaaagtaaatagtcctcataaatatataaacatttgattttagtcccattaaaatattttttaggcttttgatcc 20510470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 33752786 - 33752712
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttg 320  Q
    |||||||||||||   |||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||    
T  33752786 ttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctccctaaaatattctttaggcttttg 33752712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 54164719 - 54164616
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatg 344  Q
    ||||||||||||| | ||  | |||||||||||||||||||||||| ||||  ||||||||| |||||| ||| | | ||||||||||||||||| ||||    
T  54164719 ttaaataagtaaatagtctccctaaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaaaatttttcatttatg 54164620  T
Q  345 aaat 348  Q
    ||||    
T  54164619 aaat 54164616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 13552915 - 13552821
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcat 339  Q
    ||||||||||||| | ||||| |||||||| ||| ||||||||||| || || ||||||||| |||||| ||||| ||| |||||||||||||||    
T  13552915 ttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcat 13552821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 53343708 - 53343796
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaattt 334  Q
    |||||||||||||   ||||||||||||||||||| |||||||||| ||||  |||||||||  ||||| ||| | |||||||||||||    
T  53343708 ttaaataagtaaatggtcctcttaaatataccaacgtttgattttagtctcgttaaaatatttcttaggttttgggtcctctaaaattt 53343796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 28687713 - 28687619
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatc 340  Q
    ||||||||||||| | | || ||||||||| ||||||||||||||| |  | |||||||||| |||||||||||| | ||||||||||||||||||    
T  28687713 ttaaataagtaaatagttct-ttaaatatatcaacatttgattttagttactctaaaatattttttagggttttggtccctctaaaatttttcatc 28687619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 54164469 - 54164572
Alignment:
Q  246 ttaaataagtaaaaattcctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatg 344  Q
    ||||||||||||| | || |  |||||||||||||||||||||||| ||  | ||||||||  |||||| ||||| ||| ||||||||||||||| ||||    
T  54164469 ttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcctcataaaatatattttaggcttttggtccatctaaaatttttcatttatg 54164568  T
Q  345 aaat 348  Q
    ||||    
T  54164569 aaat 54164572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 28687485 - 28687567
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcc-tctaaaatttttcatctatgaaat 348  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||| | ||||| ||| ||||||| ||||||| | ||||||    
T  28687485 ttaaatataccaacatttaattttaatctctctaaaatattccttatgcttttggtccatctaaaaattttcatatgtgaaat 28687567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 34665210 - 34665152
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcct 325  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||| ||||| ||||    
T  34665210 ttaaatataccaacatttgattttagtcaccctaaaatattttttaggcttttgttcct 34665152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 7513552 - 7513633
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||| ||||||||  || ||||||||| |||||| |||| | || ||||||||||||||| ||||||||    
T  7513552 taaatataccaacatttaattttaattaccttaaaatattttttaggcttttggttcatctaaaatttttcatttatgaaat 7513633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 17431191 - 17431110
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgat-cctctaaaatttttcatctatgaaat 348  Q
    |||||||| ||||||||||||||| || |||||||||||| |||||| ||||| | |||| |||| |||||||| |||||||    
T  17431191 taaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctccaaaaattttcatccatgaaat 17431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 33752326 - 33752406
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||| ||| ||||||||||| || |||||||||||||||| || ||||  |||| ||||||||| ||||||||||||    
T  33752326 ttaaatatatcaatatttgattttagtccccctaaaatattcttt-ggcttttagtcctttaaaattttccatctatgaaat 33752406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 17430738 - 17430793
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc 323  Q
    |||||||||||||||||||||||| || | ||||||||||| ||||| ||||||||    
T  17430738 taaatataccaacatttgattttagtccctctaaaatattccttaggcttttgatc 17430793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 32186700 - 32186618
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc-ctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||||| |||||| |  | ||||||||||||||||| ||||| || |||||||| ||||||| ||||||||    
T  32186700 cttaaatataccaacatttaattttagttcctctaaaatattctttaggcttttggtctctctaaaa-ttttcatttatgaaat 32186618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 34665005 - 34665058
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttga 321  Q
    ||||||||| |||||||||||||| || || |||||||||||||||| ||||||    
T  34665005 taaatatactaacatttgattttagtccccttaaaatattctttaggtttttga 34665058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 6292 - 6348
Alignment:
Q  264 ctcttaaatataccaacatttgattttaatctccctaaaatattctttagggttttg 320  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  6292 ctcttaaatataccaacatttgatttcaatctttctaaaatattctttagggttttg 6348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 64056 - 63975
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggtttt-gatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||||||||||| |||||| |  |||||||||||| |||||| |||| |  ||||| ||||||||||||||||||||    
T  64056 taaatataccaacatttaattttagttcccctaaaatattatttaggtttttagtccctctcaaatttttcatctatgaaat 63975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 30790 - 30716
Alignment:
Q  266 cttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatc 340  Q
    ||||||||||  |||||||||||||| |||||  |||||||| |||| | ||||| |||||||||| ||||||||    
T  30790 cttaaatataataacatttgattttagtctcctaaaaatattatttaagtttttggtcctctaaaaattttcatc 30716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 30336 - 30416
Alignment:
Q  268 taaatataccaacatttgattttaatctccctaaaatattctttagggttttgatcctctaaaatttttcatctatgaaat 348  Q
    ||||||||| |||||||||||||| |||||  ||||||||  ||| | ||||| ||||||||||  ||||||| |||||||    
T  30336 taaatatactaacatttgattttagtctcctaaaaatattacttaagcttttggtcctctaaaaaatttcatcaatgaaat 30416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 11684 - 11600
Alignment:
Q  267 ttaaatataccaacatttgattttaatctccctaaaatattctttagggttttgatc---ctctaaaatttttcatctatgaaat 348  Q
    |||||||||| || ||||||||||| || | ||||||||||  ||||| ||||| ||   ||||||||| |||||||||||||||    
T  11684 ttaaatatacgaatatttgattttagtcactctaaaatatttcttaggtttttggtccctctctaaaatatttcatctatgaaat 11600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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