View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_33 (Length: 335)
Name: NF3943_low_33
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 12217721 - 12218029
Alignment:
| Q |
18 |
gctgtcacgtcttagacataaggaaaaaattgcatcatatatccgtggctgctcgtgaaattaagaccccctatctatgccatgtgcataacagcagaag |
117 |
Q |
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| T |
12217721 |
gctgttacatcttagacataaggaaaaaattgcatcatatatccgtggctgctcgtgaaattaagaccccctatctatgccatgtgcataacagcagaag |
12217820 |
T |
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| Q |
118 |
gaattaataaaattattttgtatgtccaaaccttaattgcaggatacacattatgacattattgaattaaattctttgttatatccatagtcaatggaaa |
217 |
Q |
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| T |
12217821 |
gaattaataaaattattttgtatgtccaaaccttaattgcaggatacacattatgacattattgaattaaattctttgttatatccatagtcaatggaaa |
12217920 |
T |
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| Q |
218 |
gctaaacctcaaccatcaatccttcattccaaatnnnnnnnttccagcctgtcttaaaaaattccatttctgttcaaacatatatattttgttttcacat |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12217921 |
gctaaacctcaaccatcaatccttcattccaaataaaaaaattccagcctgtcttaaaaaattccatttctgttcaaacatatatattttgttttcacat |
12218020 |
T |
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| Q |
318 |
cattcttct |
326 |
Q |
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| T |
12218021 |
cattcttct |
12218029 |
T |
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