View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_low_35 (Length: 327)

Name: NF3943_low_35
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_low_35
NF3943_low_35
[»] chr8 (3 HSPs)
chr8 (15-313)||(7950366-7950664)
chr8 (84-311)||(7941399-7941626)
chr8 (38-228)||(7947033-7947223)
[»] chr6 (4 HSPs)
chr6 (56-266)||(6802961-6803171)
chr6 (24-311)||(6785771-6786055)
chr6 (89-178)||(12837566-12837655)
chr6 (89-143)||(30635845-30635899)
[»] chr7 (4 HSPs)
chr7 (72-206)||(15129269-15129403)
chr7 (120-193)||(15107734-15107807)
chr7 (109-197)||(20460349-20460437)
chr7 (89-196)||(20472158-20472265)
[»] chr3 (6 HSPs)
chr3 (83-209)||(12110190-12110316)
chr3 (83-209)||(12123861-12123987)
chr3 (84-192)||(12128042-12128150)
chr3 (73-205)||(30157267-30157399)
chr3 (71-165)||(30056008-30056102)
chr3 (116-210)||(30079714-30079808)
[»] chr1 (1 HSPs)
chr1 (89-190)||(5951050-5951151)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 7950664 - 7950366
Alignment:
Q  15 ggcaagaaatcttttatgagtccagggttagaggaaacattgaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcag 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  7950664 ggcaagaaatcttttatgagtccacggttagaggaaacattgaagaatacatcgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcag 7950565  T
Q  115 gattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagt 214  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7950564 gattaggataacgggcacaaaagcttccactttccttcttcgtgcaatcagcgtgagactgacataagttaggatgttcctcaaccatcttcataacagt 7950465  T
Q  215 tggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacgacatggtggcatctcaaatggtgaacaagc 313  Q
    |||||||||||||| ||||||||||||| |||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7950464 tggagatgatggatatgtacaataacctgcaactagtccaatagggatgcaacgacaatcgctagaacgacatggtggcatctcaaatggtgaacaagc 7950366  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 311
Target Start/End: Complemental strand, 7941626 - 7941399
Alignment:
Q  84 gaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagt 183  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||||||||    
T  7941626 gaggaaaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagt 7941527  T
Q  184 ttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacg 283  Q
    | | ||||| ||||||||||||| | | ||||||||||||||||| |   || |  ||||||| |||   |||||| |||||||| ||   ||| ||| |    
T  7941526 tagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccaattagtataacaggaatgcaacggcagctgcttgaagg 7941427  T
Q  284 acatggtggcatctcaaatggtgaacaa 311  Q
    |||||||||||||||||| || ||||||    
T  7941426 acatggtggcatctcaaacggcgaacaa 7941399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 7947223 - 7947033
Alignment:
Q  38 agggttagaggaaacattgaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaag 137  Q
    ||||||||||||||  |||||||||||||  | ||||| |   || ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  7947223 agggttagaggaaatcttgaagaatacttcttgtgctttactatttgaggaaaaacaccatccatatttgatatcaggattaggataacgagcacaaaag 7947124  T
Q  138 ctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggat 228  Q
    || |||||| | ||||||||||||||||| ||||| ||||||||||| | ||||| ||||||||||||| | | |||||||||||||||||    
T  7947123 ctaccacttcctttcttcgtgcaatcagcatgagattgacataagttagcatgtttctcaaccatcttcgtgatagttggagatgatggat 7947033  T

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Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 56 - 266
Target Start/End: Original strand, 6802961 - 6803171
Alignment:
Q  56 gaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttc 155  Q
    |||||||||||  | ||||| | ||||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||| | ||||||    
T  6802961 gaagaatacttcttgtgctttagagttagaggcaaaacaccatccatattcgatatcaagattaggataacgagcgcaaaaactcccacttcctttcttc 6803060  T
Q  156 gtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaa 255  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||  |  || |||||| |||||| | |||    
T  6803061 gtgcaatcagcatgagactgacataagttaggatgttcctcaaccatcttcataacagttggggatgatgcatgcgagcagtaacctacaactaaaaaaa 6803160  T
Q  256 cagggatgcaa 266  Q
     ||||||||||    
T  6803161 gagggatgcaa 6803171  T

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Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 6785771 - 6786055
Alignment:
Q  24 tcttttatgagtccagggttagaggaaacattgaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggat 123  Q
    |||||| | ||| ||| |||||||||||  ||||||||||| |    ||||||| ||||||||| |||| ||||||||| |||||||| |||||||||||    
T  6785771 tcttttgtaagttcagagttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaataccatccatattcgatattaggattaggat 6785870  T
Q  124 aacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagttggagatga 223  Q
    ||||||||||||| |||||||||| |||||| || |||||| | |||||||| ||||| || ||||||||||| ||||||||||||| || |   |||      
T  6785871 aacgagcacaaaaactcccacttttcttctttgtacaatcaacatgagactggcataaattaggatgttcctcgaccatcttcataatagat---gatat 6785967  T
Q  224 tggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacgacatggtggcatctcaaatggtgaacaa 311  Q
    ||||||| | ||  ||||||||| |||   || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  6785968 tggatttatgcagaaacctccaattagcgcaatagggatgcaacgacaatcgctagagcgacatggtggcatctcaaatggcgaacaa 6786055  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 12837566 - 12837655
Alignment:
Q  89 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgaca 178  Q
    ||||||||| |||| || | |||||| ||||||| ||||||| ||||||||||||||| |||||||  |||| ||| | |||||||||||    
T  12837566 aaaacaccagccatttttgttatcagaattaggagaacgagcgcaaaagctcccacttcccttcttgttgcattcatcatgagactgaca 12837655  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 30635845 - 30635899
Alignment:
Q  89 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctccca 143  Q
    ||||||||| ||||||||| |||||  ||||| ||||||||| ||||||||||||    
T  30635845 aaaacaccaaccatgttcgttatcaaaattagaataacgagcgcaaaagctccca 30635899  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 15129269 - 15129403
Alignment:
Q  72 gcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgag 171  Q
    ||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||||||| || |||||| || |||||||  |||||||   ||| |    
T  15129269 gcttcaacgttagaggtaaaacaccagccatgttcgatatcagaattaggataacgagcacagaaactcccatttcccttcttgatgcaatctatgtggg 15129368  T
Q  172 actgacataagtttggatgttcctcaaccatcttc 206  Q
    | ||||||||||| |||||||| || |||||||||    
T  15129369 attgacataagttgggatgttcttcgaccatcttc 15129403  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 15107734 - 15107807
Alignment:
Q  120 ggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttc 193  Q
    |||||||||||||| |||||||||||| |||| || ||||| ||  | ||||| ||||||| |||||| |||||    
T  15107734 ggataacgagcacagaagctcccacttccctttttggtgcattcgacatgagattgacataggtttgggtgttc 15107807  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 20460437 - 20460349
Alignment:
Q  109 tatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctca 197  Q
    ||||||||| | |||||||||| || ||||| ||| || |||||| |||||| ||| | || |||  ||||||||| ||||||||||||    
T  20460437 tatcaggatcaagataacgagcgcagaagcttccaattcccttctccgtgcattcaacatgtgacctacataagttaggatgttcctca 20460349  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 20472265 - 20472158
Alignment:
Q  89 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttc-gtgcaatcagcgtgagactgacataagtttgg 187  Q
    ||||||||| |||| |||  |||||| |||||||||||| ||||||||| |||||  |||||  ||| |||||||| |  ||||||||||| || ||| |    
T  20472265 aaaacaccagccatattcattatcagaattaggataacgcgcacaaaaggtccca-attcctctttctgtgcaatctgtatgagactgacaaaatttttg 20472167  T
Q  188 atgttcctc 196  Q
    |||||||||    
T  20472166 atgttcctc 20472158  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 12110316 - 12110190
Alignment:
Q  83 agaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataag 182  Q
    ||||| ||||||||| |||| ||||| ||||| ||||| |||||||||||||||| |||||||| |||||||  |||| || || ||||  |||||||||    
T  12110316 agaggcaaaacaccacccatattcgacatcagcattagcataacgagcacaaaagttcccacttcccttcttgatgcactcggcatgagtttgacataag 12110217  T
Q  183 tttggatgttcctcaaccatcttcata 209  Q
    || ||||||||||| | ||||||||||    
T  12110216 ttaggatgttcctcgatcatcttcata 12110190  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 12123987 - 12123861
Alignment:
Q  83 agaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataag 182  Q
    ||||| |||||||||||||| ||||||||||| ||||| |||||| ||||||||| | |||||| |||||||   ||| ||||| ||||  || ||||||    
T  12123987 agaggcaaaacaccatccatattcgatatcagcattagcataacgggcacaaaagtttccacttcccttcttgaagcattcagcatgagtttggcataag 12123888  T
Q  183 tttggatgttcctcaaccatcttcata 209  Q
    || ||||||||||| | ||||||||||    
T  12123887 ttaggatgttcctcgatcatcttcata 12123861  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 12128150 - 12128042
Alignment:
Q  84 gaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagt 183  Q
    |||| |||||||||||||| ||||||||||  ||||| |||||||||||||||| | |||||| |||||||  |||| || || ||||  ||||||||||    
T  12128150 gaggcaaaacaccatccatattcgatatcatcattagcataacgagcacaaaagtttccacttcccttcttgatgcactcggcatgagtttgacataagt 12128051  T
Q  184 ttggatgtt 192  Q
    | |||||||    
T  12128050 taggatgtt 12128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 30157267 - 30157399
Alignment:
Q  73 cttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgaga 172  Q
    ||||| || |||||| ||||||||| |||| || |||||||| ||||||| | ||||||||| |  |||||||  |||| || ||||| ||| | |||||    
T  30157267 cttcagagatagaggcaaaacaccagccatatttgatatcagaattaggaaagcgagcacaataattcccactacccttttttgtgcattcatcatgaga 30157366  T
Q  173 ctgacataagtttggatgttcctcaaccatctt 205  Q
    |  ||||||||| || |||||||||||| ||||    
T  30157367 ccaacataagttaggttgttcctcaaccttctt 30157399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 30056008 - 30056102
Alignment:
Q  71 tgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcag 165  Q
    ||||||| || |||||| ||||||||| |||| || |||||||| ||||| | |||||||||||||  |||||||  ||||||| ||||| ||||    
T  30056008 tgcttcagagatagaggcaaaacaccagccatatttgatatcagaattagcaaaacgagcacaaaaattcccactacccttctttgtgcattcag 30056102  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 30079714 - 30079808
Alignment:
Q  116 attaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataa 210  Q
    ||||||| |||||||||||||  |||||||  | ||||| ||||| |||| |||||  || |||||||| |||||||| |||||| |||| ||||    
T  30079714 attaggaaaacgagcacaaaaattcccactacctttctttgtgcattcagtgtgagtttggcataagttaggatgttcttcaaccttctttataa 30079808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 5951050 - 5951151
Alignment:
Q  89 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 188  Q
    ||||||||| ||||  || | |||| || ||||| || |||||||||||||||||||| |||| ||| |||| ||| | ||||| ||||||| ||| |||    
T  5951050 aaaacaccaaccataatcaacatcaagaataggagaatgagcacaaaagctcccacttcccttgttcatgcattcaacatgagagtgacatatgttagga 5951149  T
Q  189 tg 190  Q
    ||    
T  5951150 tg 5951151  T

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