View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_39 (Length: 308)
Name: NF3943_low_39
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 36621749 - 36621471
Alignment:
| Q |
13 |
aatatagtacatgtagttgcatgattttgttttgatggactagtagttgaatgatatttttctaattaagacattataaggtaattaatcaacaaatagt |
112 |
Q |
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| T |
36621749 |
aatatagcacatgtagttgcatgattttgttttgatggactagtagttgaatgatatttttctaattaagacattataaggtaattaatcaacaaatagt |
36621650 |
T |
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| Q |
113 |
gaaacatattttcattctgctatgagagacacaaacaaaccaaaacaattatcaagtcattgacaaatatttataaaaattatcgccaacatatttcctt |
212 |
Q |
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| T |
36621649 |
gaaacatattttcattctgctatgagagacacaaacaaaccaaaacaattatcaagtcattgacaaatatttataaaaattatcgccaacatatttcctt |
36621550 |
T |
|
| Q |
213 |
aagtgcag-nnnnnnnnagtgaaagataattacccatcaaattgttggaaattgtttaatgtattcattcattagaagt |
290 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36621549 |
aagtgcagtttttttttagtgaaagataattacccatcaaattgttggaaattgtttaatgtattcatttattagaagt |
36621471 |
T |
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