View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_low_40 (Length: 306)

Name: NF3943_low_40
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_low_40
NF3943_low_40
[»] chr4 (13 HSPs)
chr4 (101-171)||(35605091-35605161)
chr4 (211-288)||(35605191-35605268)
chr4 (1-79)||(7509445-7509523)
chr4 (1-75)||(9768677-9768751)
chr4 (1-75)||(27071017-27071091)
chr4 (1-75)||(27151103-27151177)
chr4 (17-77)||(6243530-6243590)
chr4 (1-75)||(4943174-4943248)
chr4 (6-79)||(5943852-5943925)
chr4 (6-75)||(48425926-48425995)
chr4 (29-75)||(36353313-36353359)
chr4 (6-75)||(25887402-25887471)
chr4 (34-76)||(27024633-27024675)
[»] chr1 (17 HSPs)
chr1 (1-75)||(13496522-13496596)
chr1 (1-77)||(24455393-24455469)
chr1 (1-75)||(42435651-42435725)
chr1 (1-77)||(32049742-32049818)
chr1 (6-75)||(18410217-18410286)
chr1 (17-77)||(49004872-49004932)
chr1 (6-77)||(2023037-2023108)
chr1 (6-76)||(24775444-24775514)
chr1 (6-76)||(38984638-38984708)
chr1 (6-76)||(45536865-45536935)
chr1 (6-75)||(28645871-28645940)
chr1 (6-75)||(32524066-32524135)
chr1 (6-75)||(43643263-43643332)
chr1 (5-76)||(20274401-20274472)
chr1 (6-81)||(21332939-21333014)
chr1 (17-75)||(2840351-2840409)
chr1 (34-75)||(42829976-42830017)
[»] chr8 (13 HSPs)
chr8 (1-78)||(16428144-16428221)
chr8 (1-75)||(40557396-40557470)
chr8 (6-75)||(22513813-22513882)
chr8 (1-75)||(13279832-13279906)
chr8 (1-77)||(36896643-36896719)
chr8 (17-75)||(33441348-33441406)
chr8 (6-75)||(6416574-6416643)
chr8 (6-75)||(18385695-18385764)
chr8 (17-76)||(12501775-12501834)
chr8 (6-75)||(39622194-39622263)
chr8 (18-75)||(29089218-29089275)
chr8 (6-72)||(9220023-9220089)
chr8 (29-70)||(16888896-16888937)
[»] chr6 (7 HSPs)
chr6 (1-77)||(14175403-14175479)
chr6 (1-77)||(14179939-14180015)
chr6 (1-77)||(4271700-4271776)
chr6 (6-75)||(18903215-18903284)
chr6 (7-75)||(22510273-22510341)
chr6 (7-77)||(19420585-19420655)
chr6 (6-75)||(19420186-19420255)
[»] chr3 (18 HSPs)
chr3 (1-77)||(44516933-44517009)
chr3 (1-77)||(54610145-54610221)
chr3 (1-75)||(10122768-10122842)
chr3 (1-75)||(38190546-38190620)
chr3 (1-75)||(43844791-43844865)
chr3 (17-77)||(35350908-35350968)
chr3 (17-76)||(1003116-1003175)
chr3 (17-72)||(30106651-30106706)
chr3 (6-75)||(22397814-22397883)
chr3 (17-75)||(26706219-26706277)
chr3 (17-75)||(33957288-33957346)
chr3 (6-70)||(33955902-33955966)
chr3 (6-77)||(3345024-3345095)
chr3 (6-77)||(28418445-28418516)
chr3 (6-75)||(37964781-37964850)
chr3 (17-75)||(23302204-23302262)
chr3 (6-75)||(4066794-4066863)
chr3 (6-70)||(23302855-23302919)
[»] chr7 (11 HSPs)
chr7 (1-75)||(18784696-18784770)
chr7 (1-75)||(35113343-35113417)
chr7 (1-75)||(37316168-37316242)
chr7 (1-75)||(44045636-44045710)
chr7 (1-75)||(35504827-35504901)
chr7 (1-75)||(42046585-42046659)
chr7 (6-77)||(42049296-42049367)
chr7 (6-78)||(34643900-34643972)
chr7 (6-75)||(21954258-21954327)
chr7 (6-75)||(46804756-46804825)
chr7 (6-75)||(47400845-47400914)
[»] chr5 (14 HSPs)
chr5 (1-75)||(22721386-22721460)
chr5 (1-75)||(36789769-36789843)
chr5 (1-75)||(16475572-16475646)
chr5 (1-75)||(25336051-25336125)
chr5 (1-76)||(1212760-1212835)
chr5 (17-75)||(23107629-23107687)
chr5 (1-78)||(28969630-28969707)
chr5 (6-77)||(16478167-16478238)
chr5 (6-80)||(1598745-1598819)
chr5 (6-79)||(40830465-40830538)
chr5 (6-77)||(39565300-39565371)
chr5 (6-75)||(5812621-5812690)
chr5 (18-75)||(22497057-22497114)
chr5 (17-76)||(22387014-22387073)
[»] chr2 (7 HSPs)
chr2 (1-75)||(12256740-12256814)
chr2 (1-75)||(42843102-42843176)
chr2 (6-76)||(40263415-40263485)
chr2 (6-75)||(3555066-3555135)
chr2 (6-76)||(4651531-4651601)
chr2 (34-75)||(6904285-6904326)
chr2 (24-75)||(42224050-42224101)
[»] scaffold0088 (1 HSPs)
scaffold0088 (6-75)||(10643-10712)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-75)||(198991-199060)
[»] scaffold0368 (1 HSPs)
scaffold0368 (34-75)||(10032-10073)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 35605091 - 35605161
Alignment:
Q  101 actcattctgagatctttagaaccacatagttagtggttttgaaaatgaattagtttttcatcgctcagtt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35605091 actcattctgagatctttagaaccacatagttagtggttttgaaaatgaattagtttttcatcgctcagtt 35605161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 35605191 - 35605268
Alignment:
Q  211 tccttgcctaaacttaattgcctatttgtggatgccaactaacaaaataattatttttatgcattgctaacgagttct 288  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  35605191 tccttgcctaaacttaattgcctatttgtcgatgccaactaacaaaataattatttttatacattgctaacgagttct 35605268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7509523 - 7509445
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatat 79  Q
    |||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7509523 tgaggtggacatccttaaaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatat 7509445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9768677 - 9768751
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9768677 tgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagat 9768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27071091 - 27071017
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27071091 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27071017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27151177 - 27151103
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27151177 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27151103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 6243530 - 6243590
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6243530 agaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 6243590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4943248 - 4943174
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  4943248 tgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 4943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 5943925 - 5943852
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatat 79  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  5943925 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatatat 5943852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 48425995 - 48425926
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| || | ||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  48425995 tggacatctttagaggagagaattttgaaataggctatttctaaaaactctaaattgttaatataaagat 48425926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 36353313 - 36353359
Alignment:
Q  29 tttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  36353313 tttgaaataggctatttttaaaaactctaaattgttagtataaagat 36353359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 25887471 - 25887402
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| ||||   ||||||||| |||||||||||||||||||||||||    
T  25887471 tggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 25887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 27024633 - 27024675
Alignment:
Q  34 aataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||    
T  27024633 aataggctatttctaaaaactctaaattgttagtatgaagata 27024675  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13496596 - 13496522
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13496596 tgaggtggacatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 13496522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24455393 - 24455469
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24455393 tgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagatat 24455469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42435725 - 42435651
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42435725 tgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42435651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32049818 - 32049742
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  32049818 tgaggtggacatccttagaggaaatgaatttaaaataggctatttctaagaactctaaattgttagtataaagatat 32049742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 18410286 - 18410217
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | ||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||    
T  18410286 tggacatctttagaggaaaggattttgaaatagactatttctaaaaactctaaattgttagtataaagat 18410217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 49004932 - 49004872
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    ||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  49004932 agaggaaaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 49004872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 2023108 - 2023037
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  2023108 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 2023037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 24775514 - 24775444
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  24775514 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 24775444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 38984638 - 38984708
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||||| | |||||| |||| ||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  38984638 tggacatctttagaggagaggattttgaaataggctgtttctaaaaactctaaattgttagtataaagata 38984708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 45536935 - 45536865
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||||| | ||||||||| | |||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  45536935 tggacatctttagaggaaagaattttggaataggctatttctaaaaactctaaattgttagtataaagata 45536865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 28645871 - 28645940
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  28645871 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 28645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 32524066 - 32524135
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  32524066 tggacatctttagaggagaggattttaaaataggctatttctaaaaactctaaattgttagtataaagat 32524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 43643263 - 43643332
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  43643263 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 43643332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 20274472 - 20274401
Alignment:
Q  5 atggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    ||||||||| | |||| |||||| |||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  20274472 atggacatctttagagtaaaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 20274401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 21332939 - 21333014
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatatta 81  Q
    |||||||| | |||||| |||| |||| ||| || ||||||||| ||||||||||||||||||||||||| |||||    
T  21332939 tggacatctttagaggagaggattttggaatgggctatttctaaaaactctaaattgttagtataaagatttatta 21333014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 2840409 - 2840351
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||| |||| |||| |||||| | ||||||| |||||||||||||||||||||||||    
T  2840409 agaggagaggattttggaataggctgtttctaaaaactctaaattgttagtataaagat 2840351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 42829976 - 42830017
Alignment:
Q  34 aataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  42829976 aataggctatttctaaaaactctaaattgttagtataaagat 42830017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16428221 - 16428144
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatata 78  Q
    |||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16428221 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatata 16428144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40557470 - 40557396
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  40557470 tgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 40557396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 22513882 - 22513813
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  22513882 tggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 22513813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13279832 - 13279906
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  13279832 tgaggtggacatccttagagcaaaggaatttgaaataggctatttctaaaaactctaaattgttagtataaagat 13279906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36896643 - 36896719
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | ||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||    
T  36896643 tgaggtggacatccttagaggaaaggaatttaaaatagactatttctaaaaactctaaattgttagtataaagatat 36896719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33441406 - 33441348
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  33441406 agaggaaaggaatttgaaataagctatttctaaaaactctaaattgttagtataaagat 33441348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 6416643 - 6416574
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  6416643 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 6416574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 18385695 - 18385764
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  18385695 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18385764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 12501775 - 12501834
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||| |||| ||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  12501775 agaggagaggattttgaaataggctatttctaaaaactctaaattgttagcataaagata 12501834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 39622194 - 39622263
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||| | |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  39622194 tggacatctttagagaagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 39622263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29089218 - 29089275
Alignment:
Q  18 gaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||| |||| |||| ||||  |||||||||| |||||||||||||||||||||||||    
T  29089218 gaggagaggattttggaataaattatttctaaaaactctaaattgttagtataaagat 29089275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 9220089 - 9220023
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaa 72  Q
    |||||||| | |||||| || | |||| |||||  ||||||||| ||||||||||||||||||||||    
T  9220089 tggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttagtataaa 9220023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 16888896 - 16888937
Alignment:
Q  29 tttgaaataggttatttctaagaactctaaattgttagtata 70  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  16888896 tttgaaataagctatttctaaaaactctaaattgttagtata 16888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14175479 - 14175403
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14175479 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 14175403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14180015 - 14179939
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14180015 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 14179939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4271700 - 4271776
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  4271700 tgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagatat 4271776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 18903215 - 18903284
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  18903215 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18903284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 22510341 - 22510273
Alignment:
Q  7 ggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  22510341 ggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22510273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 19420655 - 19420585
Alignment:
Q  7 ggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    ||||||| | |||||| |||| |||| |||| | ||||||||| ||||||||||| |||||||||||||||    
T  19420655 ggacatctttagaggagaggattttggaataagctatttctaaaaactctaaattattagtataaagatat 19420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 19420186 - 19420255
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  19420186 tggacatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 19420255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44516933 - 44517009
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44516933 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 44517009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 54610221 - 54610145
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  54610221 tgaggtggacatccttagaggaaaggaatttgaaataggctatttttaagaactctaaattgttagtataaagatat 54610145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 10122768 - 10122842
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||||||||||| | | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  10122768 tgagatggacatctttaaaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 10122842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38190546 - 38190620
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  38190546 tgaggtggacatccttagaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 38190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43844865 - 43844791
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  43844865 tgaggtggacatccttagaggaaaggaatttgaaataggctatttgtaagaactctaaattgttagtataaagat 43844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 35350908 - 35350968
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35350908 agagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 35350968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 1003116 - 1003175
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1003116 agagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 1003175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 30106706 - 30106651
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaa 72  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30106706 agaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 30106651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 22397883 - 22397814
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | ||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  22397883 tggacatctttagaggaaaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 22397814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 26706219 - 26706277
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  26706219 agaggaaagaaatttaaaatagactatttctaagaactctaaattgttagtataaagat 26706277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 33957288 - 33957346
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  33957288 agaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 33957346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 33955902 - 33955966
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtata 70  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| ||||||||||||||||||||    
T  33955902 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtata 33955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 3345024 - 3345095
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||||||| | |||| | |||| |||| |||||| ||||||||| |||| ||||||||||||||||||||||    
T  3345024 tggacatctttagagaagaggattttggaataggctatttctaaaaactttaaattgttagtataaagatat 3345095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 28418445 - 28418516
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||||||| | |||||| || | |||| |||| | ||||||||| |||||||||||||||||||||||||||    
T  28418445 tggacatctttagaggagagaattttggaatatgctatttctaaaaactctaaattgttagtataaagatat 28418516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 37964850 - 37964781
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| || | |||| |||||| ||||||||| ||||||||||||||| |||||||||    
T  37964850 tggacatctttagaggagagaattttggaataggctatttctaaaaactctaaattgttaatataaagat 37964781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 23302262 - 23302204
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||| |||| |||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  23302262 agaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 23302204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 4066794 - 4066863
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| || | |||| |||||  ||||||||| ||||||||||||||| |||||||||    
T  4066794 tggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttaatataaagat 4066863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 23302919 - 23302855
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtata 70  Q
    |||||||| | |||||| |||| |||  |||| | ||||||||| ||||||||||||||||||||    
T  23302919 tggacatctttagaggagaggattttagaataagctatttctaaaaactctaaattgttagtata 23302855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 18784696 - 18784770
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18784696 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 18784770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35113417 - 35113343
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35113417 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 35113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37316168 - 37316242
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37316168 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 37316242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 44045636 - 44045710
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44045636 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 44045710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35504901 - 35504827
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  35504901 tgaggtggacatccttagaggaaaggaatttgaaataggctattgctaagaactctaaattgttagtataaagat 35504827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42046659 - 42046585
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42046659 tgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42046585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 42049367 - 42049296
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  42049367 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 42049296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 34643900 - 34643972
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatata 78  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  34643900 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaaaatata 34643972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 21954258 - 21954327
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  21954258 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 21954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 46804825 - 46804756
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  46804825 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 46804756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 47400845 - 47400914
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| ||||   ||||||||| |||||||||||||||||||||||||    
T  47400845 tggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 47400914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22721386 - 22721460
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22721386 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 22721460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36789769 - 36789843
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36789769 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 36789843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 16475646 - 16475572
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16475646 tgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 16475572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25336125 - 25336051
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  25336125 tgaggtggacatccttagaggaaaggaatttgaaatagactatttctaagaactctaaattgttagtataaagat 25336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1212760 - 1212835
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||| |||||||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  1212760 tgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctagattgttagtataaagata 1212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 23107629 - 23107687
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  23107629 agaggaaaggaatttgaactaggctatttctaagaactctaaattgttagtataaagat 23107687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 28969630 - 28969707
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatata 78  Q
    |||| |||||||| | |||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||    
T  28969630 tgaggtggacatctttagagaaaaggaatttgaattaggctatttctaaaaactctaaattgttagtataaagatata 28969707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 16478238 - 16478167
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  16478238 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 16478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 1598745 - 1598819
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatatt 80  Q
    |||||||||| |||||| |||| |||| |||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  1598745 tggacatcattagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatttatt 1598819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 40830538 - 40830465
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatat 79  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  40830538 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatatat 40830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 39565300 - 39565371
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 77  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  39565300 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 39565371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 5812621 - 5812690
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  5812621 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 5812690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 22497057 - 22497114
Alignment:
Q  18 gaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  22497057 gaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22497114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 22387014 - 22387073
Alignment:
Q  17 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||| |||| |||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  22387014 agaggagaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 22387073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12256740 - 12256814
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12256740 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 12256814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42843102 - 42843176
Alignment:
Q  1 tgagatggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42843102 tgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 42843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 40263485 - 40263415
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||||| | |||||| |||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  40263485 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttattataaagata 40263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 3555066 - 3555135
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  3555066 tggacatctttagaggagaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 3555135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 4651531 - 4651601
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 76  Q
    |||||||| | |||||| |||| ||||||||||  | ||||||| ||||||||||||||||||||||||||    
T  4651531 tggacatctttagaggagaggattttgaaatagactgtttctaaaaactctaaattgttagtataaagata 4651601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 6904326 - 6904285
Alignment:
Q  34 aataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  6904326 aataggctatttctaaaaactctaaattgttagtataaagat 6904285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 42224101 - 42224050
Alignment:
Q  24 aggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    ||||||||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  42224101 aggaatttggaataagctatttctaaaaactttaaattgttagtataaagat 42224050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 10712 - 10643
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | | |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  10712 tggacatctttaaaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 10643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 198991 - 199060
Alignment:
Q  6 tggacatcatcagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||||| | |||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  198991 tggacatctttagaggagaggatttttaaataggctatttctaaaaactctaaattgttagtataaagat 199060  T

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Target: scaffold0368 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 10032 - 10073
Alignment:
Q  34 aataggttatttctaagaactctaaattgttagtataaagat 75  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  10032 aataggctatttctaaaaactctaaattgttagtataaagat 10073  T

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