View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_41 (Length: 305)
Name: NF3943_low_41
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 42875376 - 42875654
Alignment:
| Q |
18 |
ctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875376 |
ctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
42875475 |
T |
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| Q |
118 |
gtctttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaaca |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42875476 |
gtctttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaaca |
42875575 |
T |
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| Q |
218 |
ctgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactatgagagttatgtttgatgatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42875576 |
ctgcccatgttgttatttttgggttggactaaggttcaatgttaagattggtacactatgagagttatgtttgatgatg |
42875654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 42889925 - 42889647
Alignment:
| Q |
18 |
ctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
117 |
Q |
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| T |
42889925 |
ctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
42889826 |
T |
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| Q |
118 |
gtctttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaaca |
217 |
Q |
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| T |
42889825 |
gtctttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaaca |
42889726 |
T |
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| Q |
218 |
ctgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactatgagagttatgtttgatgatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42889725 |
ctgcccatgttgttatttttgggttggactaaggttcaatgttaagattggtacactatgagagttatgtttgatgatg |
42889647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 42884507 - 42884768
Alignment:
| Q |
18 |
ctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884507 |
ctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
42884606 |
T |
|
| Q |
118 |
gtctttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaaca |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42884607 |
gtctttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaaca |
42884706 |
T |
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| Q |
218 |
ctgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactatgag |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42884707 |
ctgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactttgag |
42884768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 37505595 - 37505662
Alignment:
| Q |
50 |
ccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
117 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
37505595 |
ccatatgcagcagcagcatcaaaatgtctataaccttgtttgatggcttcaaggacagcatcttttgt |
37505662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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