View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_low_46 (Length: 277)

Name: NF3943_low_46
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_low_46
NF3943_low_46
[»] chr4 (9 HSPs)
chr4 (2-205)||(53020352-53020555)
chr4 (203-255)||(53020269-53020321)
chr4 (203-258)||(35802394-35802449)
chr4 (203-258)||(46611333-46611388)
chr4 (203-247)||(39163443-39163487)
chr4 (203-258)||(5556243-5556297)
chr4 (58-152)||(23609750-23609842)
chr4 (207-258)||(54348996-54349046)
chr4 (76-104)||(14602071-14602099)
[»] chr3 (2 HSPs)
chr3 (203-258)||(43543143-43543198)
chr3 (203-258)||(49020695-49020750)
[»] chr2 (5 HSPs)
chr2 (203-258)||(10375434-10375489)
chr2 (203-258)||(10377696-10377751)
chr2 (203-258)||(24573720-24573774)
chr2 (203-258)||(27613667-27613722)
chr2 (76-152)||(26713545-26713619)
[»] chr1 (1 HSPs)
chr1 (203-258)||(30786065-30786120)
[»] scaffold0316 (1 HSPs)
scaffold0316 (203-258)||(10510-10564)
[»] chr7 (2 HSPs)
chr7 (203-258)||(4588903-4588957)
chr7 (76-132)||(27803375-27803430)
[»] chr8 (2 HSPs)
chr8 (76-150)||(7507880-7507954)
chr8 (49-152)||(31282590-31282693)
[»] chr6 (1 HSPs)
chr6 (88-145)||(2837258-2837314)
[»] chr5 (1 HSPs)
chr5 (203-258)||(31813779-31813833)
[»] scaffold0005 (1 HSPs)
scaffold0005 (76-104)||(215279-215307)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 53020555 - 53020352
Alignment:
Q  2 gtagtggttgtgcagggtgttcgagcgtggggcaaggcaattttctgtgacggagtagaatggttcctgaaagaacgttagcaatccaacgctcaagtca 101  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53020555 gtagtagttgtgcggggtgttcgagcgtggggcaaggcaattttctgtgacggagtagaatggttcttgaaagaacgttagcaatccaacgctcaagtca 53020456  T
Q  102 gtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtaccctaagcatggtgctggatcacgattatataggtgagtgtttacaccaat 201  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  53020455 gtatcacaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtaccctaagcgtggtgctggatcacgattatataggtgagtgtttacaccgat 53020356  T
Q  202 tttt 205  Q
    ||||    
T  53020355 tttt 53020352  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 53020321 - 53020269
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggat 255  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  53020321 ttttaggacataaatgtcgatcgatggtgacaaatgtatttttaaaaggggat 53020269  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 35802449 - 35802394
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||    
T  35802449 ttttaggacataaatgtcaatcgatggtgacaaatgtatgtttaaagggggatcgt 35802394  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 46611333 - 46611388
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||| |||||||||    
T  46611333 ttttaggacataaatgtcgatcgatggtgacaaatgtatttttaaagggggatcgt 46611388  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 39163487 - 39163443
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaa 247  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||    
T  39163487 ttttaggacataaatgtcgatcgatggtgacaaatgtatttttaa 39163443  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 5556297 - 5556243
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||| ||| |||||||||||| ||||||||||||    
T  5556297 ttttaggacataaatgtcgatcgatgatgacaaatgtattttt-aaaggggatcgt 5556243  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 23609842 - 23609750
Alignment:
Q  58 agaatggttcctgaaagaacgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtacc 152  Q
    |||||||| | |||| | |||| |||| ||||||||||||||||||||||||||    |||||||||||   ||||||| |||||||||| ||||    
T  23609842 agaatggtgcttgaaggcacgtcagcactccaacgctcaagtcagtatcagaaa--gtgtggatttgtgtgaaaaagtgatgaatgaatcatacc 23609750  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 54348996 - 54349046
Alignment:
Q  207 aggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||| || ||||||||||| |||||||||||| ||||||||||||    
T  54348996 aggacataaatgtcgatcgatggtgacaaatgtattttt-aaaggggatcgt 54349046  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 14602099 - 14602071
Alignment:
Q  76 acgttagcaatccaacgctcaagtcagta 104  Q
    |||||||||||||||||||||||||||||    
T  14602099 acgttagcaatccaacgctcaagtcagta 14602071  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 43543143 - 43543198
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||| |||||||||    
T  43543143 ttttaggacataaatgtcgatcgatggtgacaaatgtatttttaaagggggatcgt 43543198  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 49020695 - 49020750
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||  ||| ||||||||||||||| |||||||||    
T  49020695 ttttaggacataaatgtcgatcgattatgacaaatgtatttttaaagggggatcgt 49020750  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 10375489 - 10375434
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||    
T  10375489 ttttaggacataaatgtcaatcgatggtgacaaatgtatttttaatgggggatcgt 10375434  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 10377751 - 10377696
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    |||||||| |||||| || ||||||||||| ||||||||||||||| |||||||||    
T  10377751 ttttaggatataaatgtcgatcgatggtgacaaatgtatttttaaagggggatcgt 10377696  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 24573720 - 24573774
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||    
T  24573720 ttttaggacataaatgtcgatcgatggtgacaaatgtattttt-aaaggggatcgt 24573774  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 27613667 - 27613722
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || |||||||||||  |||||||||||||| |||||||||    
T  27613667 ttttaggacataaatgtcgatcgatggtgactaatgtatttttaaagggggatcgt 27613722  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 26713619 - 26713545
Alignment:
Q  76 acgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtacc 152  Q
    ||||||||| |||||| ||||||||||||| || | |||||||| |||||||| |||| |||||||||||| |||||    
T  26713619 acgttagcactccaacactcaagtcagtattag-agagaggtgggtttgtgca-aaaaatggtgaatgaattgtacc 26713545  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 30786065 - 30786120
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||| |||||||||    
T  30786065 ttttaggacataaatgtcgatcgatggtgacaaatgtatttttaaagggggatcgt 30786120  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 10510 - 10564
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||    
T  10510 ttttaggacataaatgtcgatcgatggtgacaaatgtattttt-aaaggggatcgt 10564  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 4588957 - 4588903
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||    
T  4588957 ttttaggacataaatgtcgatcgatggtgacaaatgtattttt-aaaggggatcgt 4588903  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 27803375 - 27803430
Alignment:
Q  76 acgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaa 132  Q
    ||||||||| ||||||||||||||||||||| | |||||||||| | | ||||||||    
T  27803375 acgttagcactccaacgctcaagtcagtatctg-aaagaggtggttatatgcagaaa 27803430  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 7507954 - 7507880
Alignment:
Q  76 acgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgta 150  Q
    |||||| || |||||| |||||||  |||||| ||||| | |||||||||||| |||||||| ||||||||||||    
T  7507954 acgttaacactccaacactcaagttggtatcataaaagtgttggatttgtgcaaaaaagtggagaatgaatcgta 7507880  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 31282693 - 31282590
Alignment:
Q  49 tgacggagtagaatggttcctgaaagaacgttagcaatccaacgctcaagtcagtatcagaaaagaggtggattt-gtgcagaaaagtggtgaatgaatc 147  Q
    |||| ||| |||||||| |||| ||| ||||||||| ||| | |||||| ||||||  ||||| ||||||||||| || |  ||||||||||||||||||    
T  31282693 tgacagagaagaatggtgcctgcaaggacgttagcactccgatgctcaattcagtaagagaaa-gaggtggattttgtactaaaaagtggtgaatgaatc 31282595  T
Q  148 gtacc 152  Q
    |||||    
T  31282594 gtacc 31282590  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 2837314 - 2837258
Alignment:
Q  88 caacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaa 145  Q
    |||||||||||| ||||||| |||||||||||||||||||  ||| ||||||||||||    
T  2837314 caacgctcaagtaagtatca-aaaagaggtggatttgtgcgaaaaggtggtgaatgaa 2837258  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 31813833 - 31813779
Alignment:
Q  203 ttttaggacataaatatcaatcgatggtgataaatgtatttttaaaaggggatcgt 258  Q
    ||||||||||||||| || ||||||| ||| |||||||||||| ||||||||||||    
T  31813833 ttttaggacataaatgtcgatcgatgatgacaaatgtattttt-aaaggggatcgt 31813779  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 215279 - 215307
Alignment:
Q  76 acgttagcaatccaacgctcaagtcagta 104  Q
    |||||||||||||||||||||||||||||    
T  215279 acgttagcaatccaacgctcaagtcagta 215307  T

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