View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_49 (Length: 275)
Name: NF3943_low_49
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 29563792 - 29563687
Alignment:
| Q |
151 |
agtggaagtttcaagcggaaatgctgagagctgagtgtaatttgttgaggatggaggaagagatagctgttaagaagttggaaaggactcgttccaagat |
250 |
Q |
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| T |
29563792 |
agtggaagtttcaagcggaaatgctgagagctgagtgtaatttgttgaggatggagaaagagatagctgttaagaagttggaaaggactcgttccaagat |
29563693 |
T |
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| Q |
251 |
ggaacg |
256 |
Q |
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|||||| |
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| T |
29563692 |
ggaacg |
29563687 |
T |
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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 29563942 - 29563854
Alignment:
| Q |
1 |
ccaacatgttagggacattgtttgatagagagaaacgtgcacctgctgaacctcctatcaatgttccggttgtgatgttagatcgttgt |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29563942 |
ccaacatgttagggacattgtttgatagagagaaacgtgcacctgctgagcctcctatcaatgttccggttgtgatgttagatcgttgt |
29563854 |
T |
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