View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_52 (Length: 266)
Name: NF3943_low_52
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 6738919 - 6739143
Alignment:
| Q |
23 |
tgtgagatgatgtgttagaatgatagagtgcttgttaaagcatatctccaatagaaagtcttttattttgtaaggacctcgtcatattaaggacctcatt |
122 |
Q |
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| T |
6738919 |
tgtgagatgatgtgttagaaggatagagtgcttgttaaagcatatctccaatagaaagtcttttattttgtaaggatctcgtcatattaaggacctcatt |
6739018 |
T |
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| Q |
123 |
agaggaagnnnnnnnttaatacatactctttttatttctaattacaagtaaaattgattttttaagttgattcaattatgttaggatagtttagatcaca |
222 |
Q |
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| T |
6739019 |
agaggaagaaaaaaattaatacatactctttttatttttaattataaacaaaattgattttttaggttgattcaattatattaggatagtttaaatcaca |
6739118 |
T |
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| Q |
223 |
aagatttttgcttatatgttaggat |
247 |
Q |
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| T |
6739119 |
aagatttttgcttatatgttaggat |
6739143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 37980595 - 37980641
Alignment:
| Q |
154 |
ttatttctaattacaagtaaaattgattttttaagttgattcaatta |
200 |
Q |
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| T |
37980595 |
ttatttctaattataagtaaaattgattttttaggttcattcaatta |
37980641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 36465558 - 36465526
Alignment:
| Q |
168 |
aagtaaaattgattttttaagttgattcaatta |
200 |
Q |
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| T |
36465558 |
aagtaaaattgattttttaagttcattcaatta |
36465526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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