View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_low_54 (Length: 265)

Name: NF3943_low_54
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_low_54
NF3943_low_54
[»] chr2 (5 HSPs)
chr2 (13-255)||(6738590-6738842)
chr2 (13-91)||(39310379-39310457)
chr2 (13-90)||(12846992-12847069)
chr2 (13-71)||(13774497-13774555)
chr2 (13-91)||(43035453-43035531)
[»] chr8 (4 HSPs)
chr8 (13-72)||(35497673-35497732)
chr8 (13-101)||(2442765-2442853)
chr8 (13-71)||(7432532-7432590)
chr8 (13-101)||(4694724-4694812)
[»] chr4 (1 HSPs)
chr4 (39-91)||(50501418-50501470)
[»] chr3 (1 HSPs)
chr3 (24-71)||(51367707-51367753)
[»] chr7 (4 HSPs)
chr7 (13-91)||(14817440-14817518)
chr7 (13-91)||(15264436-15264514)
chr7 (13-91)||(48467824-48467901)
chr7 (23-71)||(27998944-27998992)
[»] chr5 (2 HSPs)
chr5 (13-91)||(24443904-24443982)
chr5 (13-91)||(37191257-37191335)
[»] chr1 (2 HSPs)
chr1 (13-71)||(15952869-15952927)
chr1 (23-71)||(43500190-43500238)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 6738842 - 6738590
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagcgagtacttataaatcattaca 112  Q
    ||||| ||| ||||||||| |||||||||| ||||| || ||||||  |||||||||||| |||||||| ||||| |  || || |||||||||||||||    
T  6738842 acacataagtggaggtaccggagtttgaattccgattatgacatccgacttaacaattttgatattttgacaattaaatgaatatttataaatcattaca 6738743  T
Q  113 ttttaatt--ttttatatattaaaaagcgtgaatctcactcaaaatcgaggtcttgtataaaaaattgatactca--------ggtctaacttaccactt 202  Q
    ||||||||  |||| |||||||||| | |||||||||||| ||||| ||||| |||||||||||||||||||| |        |||||||||||||||||    
T  6738742 ttttaattttttttttatattaaaaggtgtgaatctcacttaaaattgaggtgttgtataaaaaattgatactgagttgggatggtctaacttaccactt 6738643  T
Q  203 gagatccaaaaattattgcagaagttacttacttaccactttgagatcctatg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738642 gagatccaaaaattattgcagaagttacttacttaccactttgagatcctatg 6738590  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 39310457 - 39310379
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    ||||||||| |||| |||| ||||| ||| |||||||||||||||| || |||||||||  ||||||||| | ||||||    
T  39310457 acacacaagtggagttaccggagttcgaaccccgatcataacatccggcctaacaatttcgatattttgctagttgagc 39310379  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 12846992 - 12847069
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgag 90  Q
    ||||||||| ||||||||||| ||| ||| || |||||| ||||||||| ||||||||||  |||||| ||| |||||    
T  12846992 acacacaagaggaggtaccagggttcgaaccctgatcatgacatccagcctaacaattttggtattttaccagttgag 12847069  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 13774555 - 13774497
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattt 71  Q
    ||||||||| | ||||| | ||||| ||||| ||||||||||||||||| |||||||||    
T  13774555 acacacaagtgaaggtatcggagttcgaatctcgatcataacatccagcctaacaattt 13774497  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 43035531 - 43035453
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    |||||||||  |||||||| | ||| ||| ||||||||| |||||| || |||||||||   |||||||||||||||||    
T  43035531 acacacaagtagaggtaccggggttcgaaccccgatcatgacatccggcctaacaatttcggtattttgccaattgagc 43035453  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 35497673 - 35497732
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaatttt 72  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||| || ||||||||||    
T  35497673 acacacaagtggaggtaccggagtttgaaccccgatcataacatccggcctaacaatttt 35497732  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 2442853 - 2442765
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagcgagtacttat 101  Q
    ||||||||| ||||||||| | |||||||||||| ||||  ||||| || |||||||||  | ||||||||| |||||| || ||||||    
T  2442853 acacacaagtggaggtaccggggtttgaatcccggtcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttat 2442765  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 7432532 - 7432590
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattt 71  Q
    ||||| ||| ||||||||||||||| ||||||||||||| || ||| | ||||||||||    
T  7432532 acacataagtggaggtaccagagttcgaatcccgatcatgacgtccggtttaacaattt 7432590  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 4694724 - 4694812
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagcgagtacttat 101  Q
    ||||||||| ||||||| | | |||||||||||| |||| ||||||  | |||||||||  | ||||||||| |||||| || ||||||    
T  4694724 acacacaagtggaggtagcggggtttgaatcccggtcatgacatccgacctaacaatttcgacattttgccagttgagctaggacttat 4694812  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 50501470 - 50501418
Alignment:
Q  39 gaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    ||||||| |||||||||||| |||||||||||| | |||||||||| ||||||    
T  50501470 gaatcccaatcataacatccggcttaacaatttcagtattttgccagttgagc 50501418  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 51367707 - 51367753
Alignment:
Q  24 gaggtaccagagtttgaatcccgatcataacatccagcttaacaattt 71  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  51367707 gaggtaccggagttcgaa-cccgatcataacatccagcttaacaattt 51367753  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 14817518 - 14817440
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    ||||||||| ||||||||||| ||| ||| |||||||||  ||||| || |||||||||| | ||||| ||| ||||||    
T  14817518 acacacaagtggaggtaccagggttcgaaccccgatcatggcatccggcctaacaattttgacattttcccagttgagc 14817440  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 15264514 - 15264436
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    ||||||||| ||||||||||| ||| ||| |||||||||  ||||| || |||||||||| | ||||| ||| ||||||    
T  15264514 acacacaagtggaggtaccagggttcgaaccccgatcatggcatccggcctaacaattttgacattttcccagttgagc 15264436  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 48467901 - 48467824
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    ||||||||| ||||||||||| ||| ||| |||| ||||||||||| |  |||||||||  ||||||||||| ||||||    
T  48467901 acacacaagtggaggtaccagggttcgaaccccg-tcataacatccggtctaacaatttcgatattttgccagttgagc 48467824  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 27998944 - 27998992
Alignment:
Q  23 ggaggtaccagagtttgaatcccgatcataacatccagcttaacaattt 71  Q
    ||||||||||||||| ||||||||||||| || |||||  |||||||||    
T  27998944 ggaggtaccagagttcgaatcccgatcatgacgtccagtctaacaattt 27998992  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 24443904 - 24443982
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    ||||||||| ||||||||| | ||||||| |||| |||||||||||  | |||||||||   |||||||||| ||||||    
T  24443904 acacacaagtggaggtaccggggtttgaaccccggtcataacatccgacctaacaatttcggtattttgccagttgagc 24443982  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 37191335 - 37191257
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattttaatattttgccaattgagc 91  Q
    ||||| ||| ||||||||| | ||| |||||||||||||  |||||||| ||||||||||   ||||||||| ||||||    
T  37191335 acacataagtggaggtaccggggttcgaatcccgatcatggcatccagcctaacaattttggcattttgccagttgagc 37191257  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 15952869 - 15952927
Alignment:
Q  13 acacacaagcggaggtaccagagtttgaatcccgatcataacatccagcttaacaattt 71  Q
    ||||||||| ||||||||| ||||| ||| ||||||||||||||||  | |||||||||    
T  15952869 acacacaagtggaggtaccggagttcgaaccccgatcataacatccgacctaacaattt 15952927  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 43500190 - 43500238
Alignment:
Q  23 ggaggtaccagagtttgaatcccgatcataacatccagcttaacaattt 71  Q
    ||||||||||||||||||| |||||||||| |||||  | |||||||||    
T  43500190 ggaggtaccagagtttgaaccccgatcatagcatccgacctaacaattt 43500238  T

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