View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3943_low_55 (Length: 264)
Name: NF3943_low_55
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 28473926 - 28474167
Alignment:
| Q |
16 |
atacactacataaaaaacattagaattcaaagaaacataaataaatagaaaatgctattaggaaatagagagagcatatgtataaagattttcttttgag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28473926 |
atacactacataaaaaacattagaattcaaagaaacataaataaatagaaaatgctattaggaaatagagagagcatatgtataaagattttcttttgag |
28474025 |
T |
|
| Q |
116 |
ggtgagagagcatatgtatagagatgaag-nnnnnnnnnnnntccaaaatgtagtatacgtgctaaattaatttgaggtgattgtta-nnnnnnnnnctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28474026 |
ggtgagagagcatatgtatagagatgaagaaaaaaaaaaaaatccaaaatgtagtatacgtgctaaattaatttgaggtgattgttattttttttttctt |
28474125 |
T |
|
| Q |
214 |
catgataattgtttatcttaataaaagaatttggagaattat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28474126 |
catgataattgtttatcttaataaaagaatttggagaattat |
28474167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University