View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_6 (Length: 560)
Name: NF3943_low_6
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 239 - 550
Target Start/End: Original strand, 404085 - 404396
Alignment:
| Q |
239 |
tctctccaagagatggaacattcgtcctctatggcctttcgttcccgttatagacttcagcttttcaaccatattttttcctccatgtttcttgagcgag |
338 |
Q |
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| T |
404085 |
tctctccaagagatggaacattcgtcccctatggcctttcgttcccgttatagacttcagcgtttcaaccatattttttcctccatttttcttgagcgag |
404184 |
T |
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| Q |
339 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacgattcatttcaaattcctcaacaaatggatcaactatatatgctgataat |
438 |
Q |
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| T |
404185 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacaattcatttcaaattcctcaacaaatggttcaactatatatgctgttaat |
404284 |
T |
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| Q |
439 |
gtatctctctattcatgctatcaatacttgggagcctagacgagctcactttcctaccaacattctgcgttgtacaacccttgttaatctcaagctttgt |
538 |
Q |
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| T |
404285 |
gtatctctctattcatgctatcaatacttgggagcctagacgagctcactttcctaccaacattctgcgttgtacaacccttgttaatctcaagctttgt |
404384 |
T |
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| Q |
539 |
cacttatctgtg |
550 |
Q |
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| T |
404385 |
cacttatctgtg |
404396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 403906 - 404090
Alignment:
| Q |
18 |
taaaatgggcctaacacaagccagctttttaaccatattcgactgttactagggtttcaggattataagtatcaaacatgtttgatgtttgttcagcaca |
117 |
Q |
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| T |
403906 |
taaaatgggcctaacacaagccagctttttaaccatattcgattgttattagggtttcaggattataagtatcaaacatgtttgatgtttgttcagcaca |
404005 |
T |
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| Q |
118 |
aaacacgggaacgaacgatgatgtctgagcagcgcaaagacaggttgagcagtttaccagatgagatcatttgccacattctctc |
202 |
Q |
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| T |
404006 |
aaacatgggaacgaacgatgatgtctgagcagcccaaagacaggttgagcagtttaccagatgagatcatttgccacattctctc |
404090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 975497 - 975456
Alignment:
| Q |
352 |
tcattccatcaacagtttcttcctcgacattgaatacgattc |
393 |
Q |
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| T |
975497 |
tcattccatcaacactttcatccttgacattgaatacgattc |
975456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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