View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3943_low_62 (Length: 247)

Name: NF3943_low_62
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3943_low_62
NF3943_low_62
[»] chr4 (17 HSPs)
chr4 (1-242)||(14210138-14210379)
chr4 (1-242)||(14211107-14211348)
chr4 (1-242)||(14212058-14212299)
chr4 (1-242)||(14214964-14215205)
chr4 (1-242)||(14215933-14216174)
chr4 (1-242)||(14217835-14218076)
chr4 (1-242)||(14219774-14220015)
chr4 (1-242)||(14220725-14220966)
chr4 (1-242)||(14221694-14221935)
chr4 (1-242)||(14222663-14222904)
chr4 (1-242)||(14213027-14213268)
chr4 (1-242)||(14213995-14214236)
chr4 (1-242)||(14216884-14217125)
chr4 (1-242)||(14218805-14219046)
chr4 (1-242)||(14209187-14209428)
chr4 (125-235)||(30179309-30179421)
chr4 (11-61)||(41810296-41810346)
[»] chr2 (1 HSPs)
chr2 (1-242)||(31409423-31409664)
[»] chr1 (3 HSPs)
chr1 (9-235)||(40981318-40981546)
chr1 (1-235)||(50290545-50290781)
chr1 (1-61)||(14184800-14184860)
[»] chr3 (8 HSPs)
chr3 (1-232)||(14458995-14459228)
chr3 (1-235)||(12812633-12812866)
chr3 (1-66)||(53689353-53689418)
chr3 (3-72)||(45458384-45458453)
chr3 (125-169)||(53556642-53556686)
chr3 (125-180)||(43399762-43399816)
chr3 (128-165)||(45458251-45458288)
chr3 (1-54)||(52311561-52311614)
[»] chr6 (1 HSPs)
chr6 (118-235)||(2968022-2968138)
[»] chr8 (3 HSPs)
chr8 (81-169)||(16395829-16395917)
chr8 (125-180)||(38681399-38681453)
chr8 (125-180)||(38682652-38682706)
[»] chr7 (2 HSPs)
chr7 (1-66)||(37362495-37362560)
chr7 (128-168)||(43903611-43903651)
[»] chr5 (2 HSPs)
chr5 (125-169)||(30468475-30468519)
chr5 (122-169)||(40162982-40163029)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14210379 - 14210138
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14210379 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14210280  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14210279 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14210180  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14210179 atctcctcttcacactccacccaaacagactcctttgattct 14210138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14211348 - 14211107
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211348 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14211249  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211248 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14211149  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14211148 atctcctcttcacactccacccaaacagactcctttgattct 14211107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14212299 - 14212058
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14212299 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14212200  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14212199 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14212100  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14212099 atctcctcttcacactccacccaaacagactcctttgattct 14212058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14215205 - 14214964
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14215205 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14215106  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14215105 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14215006  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14215005 atctcctcttcacactccacccaaacagactcctttgattct 14214964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14216174 - 14215933
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14216174 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14216075  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14216074 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14215975  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14215974 atctcctcttcacactccacccaaacagactcctttgattct 14215933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14218076 - 14217835
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218076 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14217977  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14217976 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14217877  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14217876 atctcctcttcacactccacccaaacagactcctttgattct 14217835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14220015 - 14219774
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14220015 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14219916  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14219915 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14219816  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14219815 atctcctcttcacactccacccaaacagactcctttgattct 14219774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14220966 - 14220725
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14220966 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14220867  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14220866 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14220767  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14220766 atctcctcttcacactccacccaaacagactcctttgattct 14220725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14221935 - 14221694
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14221935 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14221836  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14221835 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14221736  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14221735 atctcctcttcacactccacccaaacagactcctttgattct 14221694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14222904 - 14222663
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14222904 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14222805  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14222804 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14222705  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14222704 atctcctcttcacactccacccaaacagactcctttgattct 14222663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14213268 - 14213027
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14213268 agcacatgagccattgatcaaatctcattccttgaaaattgatacatgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14213169  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14213168 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14213069  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14213068 atctcctcttcacactccacccaaacagactcctttgattct 14213027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14214236 - 14213995
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14214236 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14214137  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14214136 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14214037  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  14214036 atctcctcttcacactccacccaaacatactcctttgattct 14213995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14217125 - 14216884
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14217125 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14217026  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14217025 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctctgccccatccataggaaaccaagcatctcacc 14216926  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14216925 atctcctcttcacactccacccaaacagactcctttgattct 14216884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14219046 - 14218805
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14219046 agcacatgagccattgatcaaatctcattccttgaaaattgatacatgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14218947  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218946 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 14218847  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14218846 atctcctcttcacactccacccaaacagactcctttgattct 14218805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14209428 - 14209187
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14209428 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 14209329  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  14209328 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctgtctgccccatccataggaaaccaagcatctcacc 14209229  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  14209228 atctcctcttcacactccacccaaacagactcctttgattct 14209187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 30179309 - 30179421
Alignment:
Q  125 ttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaa---accaagcatctcaccatctcctcttcacactccacc 221  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| | |||||| | ||     ||||||||||||||||||||||||||||||||||||    
T  30179309 ttcttcttcttcctcttctcatcatcaccaccaccaaccctctcc-ctccatccgtcggcggcgaccaagcatctcaccatctcctcttcacactccacc 30179407  T
Q  222 caaacagactcctt 235  Q
     ||||| |||||||    
T  30179408 taaacaaactcctt 30179421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 41810296 - 41810346
Alignment:
Q  11 ccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaac 61  Q
    ||||||||||||||||| |||||||||||||  |||||||| | |||||||    
T  41810296 ccattgatcaaatctcactccttgaaaattgtaacacgcgcgtcggaaaac 41810346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 31409664 - 31409423
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31409664 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 31409565  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31409564 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcgtcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 31409465  T
Q  201 atctcctcttcacactccacccaaacagactcctttgcttct 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  31409464 atctcctcttcacactccacccaaacagactcctttgattct 31409423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 40981546 - 40981318
Alignment:
Q  9 agccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgttttctctttcc 108  Q
    |||| ||||||||| |||| || || |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40981546 agccgttgatcaaaactcactctttaaaaattgatacacgcgcatagggaaaccaaacagctgctgataacaaaacacaacacacgcgttttctctttcc 40981447  T
Q  109 caaaacaagcacgcctttcttctt---cttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcaccatctc 205  Q
    |||||||||||| |||||||||||   |||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||    
T  40981446 caaaacaagcacacctttcttcttcttcttcctcttatcatcatcaccaccgccagccctctcc-ccccatccatcggagaccaagcatctcaccatctc 40981348  T
Q  206 ctcttcacactccacccaaacagactcctt 235  Q
    ||||||||||||||||||||||||||||||    
T  40981347 ctcttcacactccacccaaacagactcctt 40981318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 50290545 - 50290781
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||| || | ||||| |||||||| |||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  50290545 agcacatcagtcgttgataaaatctcactccttgaaaattgatagacgctcatagggaaacaaaacagttgctgataacaaaacacaacacacacgtttt 50290644  T
Q  101 ctctttcccaaaacaagcacgcct---ttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctc 197  Q
    |||||||||||||||| ||| | |   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  50290645 ctctttcccaaaacaaacacacgtttcttcttcttcttcctcttatcatcatcaccaccgccaaccctctcc-ccccatccatcggagaccaagcatctc 50290743  T
Q  198 accatctcctcttcacactccacccaaacagactcctt 235  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  50290744 accatctcctcttcacactccacacaaacagactcctt 50290781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14184800 - 14184860
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaac 61  Q
    ||||||| || |||||||||||| ||| ||||| |||||||  |||||||| |||||||||    
T  14184800 agcacatcagtcattgatcaaatgtcactccttaaaaattgtaacacgcgcgtaggaaaac 14184860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14459228 - 14458995
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||| || | |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  14459228 agcacatcagtcgttgatcaaatctcactccttgaaaattgatacacgagcatagggaaacaaaacagctgctgataacaaaacacaacacacacgtttt 14459129  T
Q  101 ctctttcccaaaacaagcacgcctttcttctt---cttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctc 197  Q
    |||||| ||||||  ||||| | |||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  14459128 ctcttttccaaaatcagcacacgtttcttcttcttcttcctcttatcatcatcaccaccgccaaccctctcc-ccccatccatcggagaccaagcatctc 14459030  T
Q  198 accatctcctcttcacactccacccaaacagactc 232  Q
    ||||||||||||||||| |||||||||| ||||||    
T  14459029 accatctcctcttcacattccacccaaatagactc 14458995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12812866 - 12812633
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgctgataacaaaacacaacacacgcgtttt 100  Q
    ||||||| |||| |||||||||||||| || ||||||||||||||| ||| | ||| |||||||||||||  |||||||||||||||||| || | ||||    
T  12812866 agcacatcagccgttgatcaaatctcactcattgaaaattgatacatgcgtaaagggaaacaaaacagctaatgataacaaaacacaacaaacacatttt 12812767  T
Q  101 ctctttcccaaaacaagcacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcacc 200  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||| || |||||||| |||    
T  12812766 ctctttcccaaaacaagcccgcgtttcttcttcttcctcatatcatcatcaccaccaccaaccctctcc-ccccatccatcggagacaaagcatcttacc 12812668  T
Q  201 atctcctcttcacactccacccaaacagactcctt 235  Q
    ||||||||||||||||||| ||||| |||||||||    
T  12812667 atctcctcttcacactccaaccaaatagactcctt 12812633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 53689353 - 53689418
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 66  Q
    ||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||    
T  53689353 agcacatcagccattgatcaaatctcactccttgaaaattaacacacgcgcatagggaaacaaaac 53689418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 45458453 - 45458384
Alignment:
Q  3 cacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaacagctgc 72  Q
    |||||||||| |||||||||||||| |||||||||||||| |||| | | ||||||||||||| ||||||    
T  45458453 cacatgagcccttgatcaaatctcactccttgaaaattgaaacacacacgtaggaaaacaaaagagctgc 45458384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 53556686 - 53556642
Alignment:
Q  125 ttcttcttcttcctcttatcatcatcaccaccgccaaccctctcc 169  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  53556686 ttcttcttcttcctcttatcatcatcaccaccggcaaccctctcc 53556642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 43399762 - 43399816
Alignment:
Q  125 ttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccat 180  Q
    |||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||    
T  43399762 ttcttcttcttcctcttatcatcatcataaccggcaaccctctcc-ccccatccat 43399816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 45458288 - 45458251
Alignment:
Q  128 ttcttcttcctcttatcatcatcaccaccgccaaccct 165  Q
    |||||||||||||||||| |||||||||||||||||||    
T  45458288 ttcttcttcctcttatcaacatcaccaccgccaaccct 45458251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52311614 - 52311561
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcata 54  Q
    ||||||| || | |||||||||||||| |||||||||||||| ||| |||||||    
T  52311614 agcacatcagtcgttgatcaaatctcactccttgaaaattgacacatgcgcata 52311561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 2968138 - 2968022
Alignment:
Q  118 cacgcctttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccataggaaaccaagcatctcaccatctcctcttcacactc 217  Q
    ||||| |||||| |||||||| |||||||||||||||||  |||| |||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  2968138 cacgcgtttctttttcttccttttatcatcatcaccacccacaacgctctcc-ccccatccatcggagaccaaacatctcaccatctcctcttcacactc 2968040  T
Q  218 cacccaaacagactcctt 235  Q
    || |||||||||||||||    
T  2968039 catccaaacagactcctt 2968022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 16395829 - 16395917
Alignment:
Q  81 aaacacaacacacgcgttttctctttcccaaaacaagcacgccttt-cttcttcttcctcttatcatcatcaccaccgccaaccctctcc 169  Q
    ||||||||||||| ||||| |||||||||||||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  16395829 aaacacaacacac-cgtttcctctttcccaaaacaagctcacgttttcttcttcttcctcttatcatcttcaccaccgccaaccctctcc 16395917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 38681399 - 38681453
Alignment:
Q  125 ttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccat 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  38681399 ttcttcttcttcctcttatcatcatcaccaccgtcaaccctctcc-ccccatccat 38681453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 38682652 - 38682706
Alignment:
Q  125 ttcttcttcttcctcttatcatcatcaccaccgccaaccctctccgccccatccat 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  38682652 ttcttcttcttcctcttatcatcatcaccaccgtcaaccctctcc-ccccatccat 38682706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37362560 - 37362495
Alignment:
Q  1 agcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 66  Q
    ||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  37362560 agcacatcagccgttgatcaaatctcactccttgaaaattgacacacgcgcatagggaaacaaaac 37362495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 43903611 - 43903651
Alignment:
Q  128 ttcttcttcctcttatcatcatcaccaccgccaaccctctc 168  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  43903611 ttcttcttcctcttatcatcatcaccactaccaaccctctc 43903651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 30468475 - 30468519
Alignment:
Q  125 ttcttcttcttcctcttatcatcatcaccaccgccaaccctctcc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30468475 ttcttcttcttcctcttatcatcatcaccaccgccaaccctctcc 30468519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 40162982 - 40163029
Alignment:
Q  122 cctttcttcttcttcctcttatcatcatcaccaccgccaaccctctcc 169  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  40162982 cctttcttcttctttctcttatcatcatcaccaccgccaaccctctcc 40163029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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