View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_64 (Length: 242)
Name: NF3943_low_64
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40329458 - 40329235
Alignment:
| Q |
1 |
tgatcaatgatatttataaattttgattatagctagctagggcaatacatataaataaaaatgtttgtataatacctgagatcaatttgcatgctatcat |
100 |
Q |
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| T |
40329458 |
tgatcaatgatatttataaattttgattatagctagctagggcaatacatataaataaaaatgtttgtataatacctgagatcaatttgcatgctatcat |
40329359 |
T |
|
| Q |
101 |
tctcctttttgattctatcaatttcattgctaaggttctgtgagttcaccccnnnnnnnnnnnnggaaacaataaatgaatgagaagtcaaaaatgaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
40329358 |
tctcctttttgattctatcaatttcattgctaaggttctgtgagttcaccccaaaaaagaaaaagg-aacaataaatgaatgagaagtcaaaaatgaaca |
40329260 |
T |
|
| Q |
201 |
ttttggtgtagatctggttctaaag |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
40329259 |
ttttggtgtagatctggttctaaag |
40329235 |
T |
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