View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_69 (Length: 237)
Name: NF3943_low_69
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 14288380 - 14288590
Alignment:
| Q |
2 |
cgctcttccgctttctcgccaactacattgcaactaaaaccacttccctctctcaagtcgagatagctcgcctctccacctccgagataactcgcctcat |
101 |
Q |
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| T |
14288380 |
cgctcttccgctttctcgccaactacattgcaactaaaaccacttccctctctcaagtcgagatagctcgcctctctacctccgagataactcgcctcat |
14288479 |
T |
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| Q |
102 |
ctctaccctctccgaaaccgatatcaaccgcctcttcaatgccggcatttctgaatttgtcgacggtatcttcgaaccatttcttcctttcttcaaaatg |
201 |
Q |
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| T |
14288480 |
ctctaacctctccgaaaccgatatcaaccgcctcttcaatgccggcatttctgaatttgtcgacggtatcttcgaaccatttcttcctttcttcaaaatg |
14288579 |
T |
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| Q |
202 |
tttttcgccgg |
212 |
Q |
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||||||||||| |
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| T |
14288580 |
tttttcgccgg |
14288590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 14281230 - 14281319
Alignment:
| Q |
16 |
ctcgccaactacattgcaactaaaaccacttccctctctcaagtcgagatagctcgcctctccacctccgagataactcgcctcatctct |
105 |
Q |
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||||||||||||||||| || |||||| |||||||| | |||||||||||||||||||| ||||| ||||||||| | |||||||||| |
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| T |
14281230 |
ctcgccaactacattgctacaaaaacctcttccctcaccgaagtcgagatagctcgcctcaccaccgccgagataaataacctcatctct |
14281319 |
T |
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