View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_71 (Length: 228)
Name: NF3943_low_71
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 43407895 - 43408103
Alignment:
| Q |
1 |
aatgagagcaaagtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatg |
100 |
Q |
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| T |
43407895 |
aatgagagcaa-gtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatg |
43407993 |
T |
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| Q |
101 |
attagaagaagctgaatggacacagaaagaataaaataagggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgattttgaa |
200 |
Q |
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| T |
43407994 |
attagaagaagctgaatggacacagaaagaataaaataagggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgattttgaa |
43408093 |
T |
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| Q |
201 |
gtgagggtgt |
210 |
Q |
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|||||||||| |
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| T |
43408094 |
gtgagggtgt |
43408103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 43395678 - 43395799
Alignment:
| Q |
13 |
gtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgatt---agaaga |
109 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
43395678 |
gtgaaaattaaggaacctacttgatcaaagagggactgtttcattgcagcaagttgtctgcgagaattgtttctgtccatgattgatgattagaagaaga |
43395777 |
T |
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| Q |
110 |
agctgaatggacacagaaagaa |
131 |
Q |
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| T |
43395778 |
agctgaagggacacagaaagaa |
43395799 |
T |
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