View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_73 (Length: 227)
Name: NF3943_low_73
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_73 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 53041469 - 53041686
Alignment:
| Q |
7 |
cgttcctcagtaatcaactcgggtctattccaacacttgtgatctgcaacaggatcaccaacctgccacatcgattttgataaatgaaactagatagaaa |
106 |
Q |
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| T |
53041469 |
cgttcctcagtaattaactcaggtctattccaacacttgtgatctgcaacaggatcaccaacctgccacatcgattttgataaatgaaactagatagaaa |
53041568 |
T |
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| Q |
107 |
caaattctagaaaaacatcaatgtagttatattttacatttgatcaactgtcagcttaacagtttgtgttttcagaccaactaacctgaatatacagaac |
206 |
Q |
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| T |
53041569 |
caaattttagaaaaacatcaatgttgttatattttacatttgatcaactgtcaacttaacagtttgtgttttcagac---ctaacctgaatatacagaac |
53041665 |
T |
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| Q |
207 |
attctccgaaggatgagcatt |
227 |
Q |
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| T |
53041666 |
attctccgaaggatgagcatt |
53041686 |
T |
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