View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3943_low_75 (Length: 227)
Name: NF3943_low_75
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 8930802 - 8931007
Alignment:
| Q |
6 |
aatggaaaagttaggcacaaaacaagcagaagtagtgacaacattgtcacttaactatgaaaaggaaaaagaaatttagttgttaactttgttttctttg |
105 |
Q |
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| T |
8930802 |
aatggaaaagttaggcacaaaacaagcagaagtagtgacaacattatcacttaactatgaaaaggaaaaagagatttagttgttaactttgttttctttg |
8930901 |
T |
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| Q |
106 |
ttgatagaaaatcgttaacttcgacttagaatgataaaccatacgcatgtatatatataacctggttttaggcctacatttaatagcgtagattctacat |
205 |
Q |
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| T |
8930902 |
ttgatagaaaatcgttaactttgacttagaatgataaaacatacgcatg--tatatataacctggttttaggcctacagttaatagcttagattctacat |
8930999 |
T |
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| Q |
206 |
cgactcat |
213 |
Q |
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| T |
8931000 |
ccactcat |
8931007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 9401807 - 9401856
Alignment:
| Q |
6 |
aatggaaaagttaggcacaaaacaagcagaagtagtgacaacattgtcac |
55 |
Q |
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||||||||| | |||||||||||||| |||| ||||||||||||| |||| |
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| T |
9401807 |
aatggaaaaatcaggcacaaaacaaggagaattagtgacaacattatcac |
9401856 |
T |
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