View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3943_low_9 (Length: 516)
Name: NF3943_low_9
Description: NF3943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3943_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 13 - 509
Target Start/End: Complemental strand, 53021085 - 53020576
Alignment:
| Q |
13 |
catgagctattaaactaagaattgcatatgtcaaaagtaaagcataagataaaggataaatttgtaa--ctatattgatatggttgattacatgtcaaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
53021085 |
catgagctattaaactaagaattgcatatgtcaaaagtaaagcataagataaaggataaatttgtaaaactatattgatatggttgattacatgtcaata |
53020986 |
T |
|
| Q |
111 |
aaatgtataggtgtcgtgtttttggataaaactagttattgtagcctacataattcagccttccaaacgttcttttagtccacatagtttatagtggtcg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53020985 |
aaatgtataggtgtcgtgtttttggataaaactagttattgtagcctacataattcagccttccaaacgttcttttattccacatagtttatagtggtcg |
53020886 |
T |
|
| Q |
211 |
gaagtttgctctatactcccttcaaaatgctcacatgccccttaagtttccttaaatatcccttttaaacagtaccgattcatgtggttcgggtgttaag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53020885 |
gaagtttgctctatactcccttcaaaatgctcacatgccccttaagtttccttaaatatcccttttaaacaataccgattcatgtggttcgggtgttaag |
53020786 |
T |
|
| Q |
311 |
catcgattcttttgagggatacgcacaaatcttggattgagacttgaaatctaatacgcttgatgcacgtaattgcaatgtgcaaagttgtatcatttgg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
53020785 |
catcgattcttttgagggatacgcacaaatcttggattgagacttgaaatctaatacgcttgatgcacgtaattgcaatgtacaaagttgtatcatttgg |
53020686 |
T |
|
| Q |
411 |
agtgcacaaa-----------attgtaccattaagatcttgtgccattcatgcacaaaattcatacatactcgatttgtccttacaaagcaaggagatgt |
499 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
53020685 |
agtgcacaaaattgatgcaaaattgtaccattaagatcttgtgccattcatgcacaaaattcatacatactcgatttgtccgtacaaagcaaggagatgt |
53020586 |
T |
|
| Q |
500 |
tgtagtggtt |
509 |
Q |
| |
|
|||||||||| |
|
|
| T |
53020585 |
tgtagtggtt |
53020576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University