View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3944_low_2 (Length: 490)

Name: NF3944_low_2
Description: NF3944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3944_low_2
NF3944_low_2
[»] chr2 (9 HSPs)
chr2 (274-488)||(15516619-15516833)
chr2 (350-490)||(15533260-15533396)
chr2 (103-185)||(15516449-15516530)
chr2 (279-342)||(36429849-36429912)
chr2 (279-342)||(1404784-1404847)
chr2 (279-342)||(31238042-31238105)
chr2 (279-325)||(16766728-16766774)
chr2 (354-395)||(15623953-15623994)
chr2 (279-311)||(34841588-34841620)
[»] chr6 (17 HSPs)
chr6 (279-342)||(30912477-30912540)
chr6 (279-342)||(6943525-6943588)
chr6 (284-342)||(7223520-7223578)
chr6 (93-155)||(12245307-12245369)
chr6 (275-323)||(8545026-8545074)
chr6 (279-342)||(7918446-7918509)
chr6 (283-342)||(15528179-15528238)
chr6 (279-342)||(17250058-17250121)
chr6 (279-342)||(17543805-17543868)
chr6 (280-342)||(26053362-26053424)
chr6 (280-342)||(26073415-26073477)
chr6 (86-123)||(1178952-1178989)
chr6 (274-342)||(4597211-4597278)
chr6 (279-342)||(5422813-5422876)
chr6 (280-342)||(10958253-10958315)
chr6 (279-323)||(4841984-4842026)
chr6 (279-320)||(7359871-7359912)
[»] chr1 (17 HSPs)
chr1 (279-342)||(9955100-9955163)
chr1 (279-342)||(12800646-12800709)
chr1 (274-342)||(34478830-34478898)
chr1 (279-342)||(9327280-9327343)
chr1 (279-342)||(23528657-23528720)
chr1 (279-342)||(42180130-42180193)
chr1 (279-349)||(13276331-13276401)
chr1 (280-342)||(18304877-18304939)
chr1 (280-325)||(19010012-19010057)
chr1 (286-342)||(9128912-9128968)
chr1 (279-342)||(21846333-21846396)
chr1 (279-342)||(25146833-25146896)
chr1 (279-342)||(30619076-30619139)
chr1 (280-342)||(9352129-9352191)
chr1 (279-341)||(12513283-12513345)
chr1 (274-342)||(24117008-24117076)
chr1 (87-119)||(24117253-24117285)
[»] chr7 (12 HSPs)
chr7 (281-342)||(11326387-11326448)
chr7 (279-342)||(9685309-9685372)
chr7 (279-342)||(27221419-27221482)
chr7 (277-342)||(5715291-5715355)
chr7 (277-342)||(22687727-22687792)
chr7 (282-342)||(30294176-30294236)
chr7 (286-342)||(44944921-44944977)
chr7 (279-342)||(5058530-5058593)
chr7 (279-342)||(26281374-26281437)
chr7 (279-325)||(26617541-26617587)
chr7 (277-342)||(4247357-4247422)
chr7 (279-311)||(8346598-8346630)
[»] chr5 (10 HSPs)
chr5 (279-342)||(43234869-43234932)
chr5 (279-342)||(23172497-23172560)
chr5 (279-343)||(18843715-18843779)
chr5 (279-342)||(18051595-18051658)
chr5 (279-341)||(19042454-19042516)
chr5 (279-341)||(20320926-20320988)
chr5 (279-342)||(20923719-20923782)
chr5 (279-342)||(21059220-21059283)
chr5 (279-342)||(22645784-22645847)
chr5 (277-342)||(38158317-38158382)
[»] chr4 (11 HSPs)
chr4 (279-342)||(8011281-8011344)
chr4 (280-342)||(13023568-13023631)
chr4 (279-342)||(13551687-13551750)
chr4 (279-342)||(5362028-5362091)
chr4 (279-342)||(9770113-9770176)
chr4 (279-341)||(5375666-5375728)
chr4 (280-334)||(9149801-9149855)
chr4 (279-343)||(7044727-7044791)
chr4 (283-342)||(4156764-4156823)
chr4 (279-342)||(24719518-24719581)
chr4 (279-327)||(6347129-6347177)
[»] chr3 (11 HSPs)
chr3 (279-342)||(28745771-28745834)
chr3 (279-342)||(3449356-3449419)
chr3 (279-342)||(29067285-29067348)
chr3 (277-327)||(17796284-17796334)
chr3 (277-327)||(19104724-19104774)
chr3 (277-323)||(17796506-17796552)
chr3 (277-323)||(19104946-19104992)
chr3 (277-342)||(17796378-17796443)
chr3 (277-342)||(19104818-19104883)
chr3 (279-327)||(22494846-22494894)
chr3 (282-342)||(27676357-27676417)
[»] chr8 (10 HSPs)
chr8 (279-341)||(15294672-15294734)
chr8 (279-341)||(15475041-15475103)
chr8 (280-342)||(17788372-17788434)
chr8 (279-342)||(5922050-5922113)
chr8 (279-342)||(17646994-17647057)
chr8 (127-174)||(30240546-30240593)
chr8 (279-325)||(22910267-22910313)
chr8 (277-326)||(27836527-27836576)
chr8 (86-130)||(26575456-26575500)
chr8 (282-334)||(30240697-30240749)
[»] scaffold0417 (1 HSPs)
scaffold0417 (279-342)||(7520-7583)
[»] scaffold0186 (1 HSPs)
scaffold0186 (279-342)||(8444-8507)
[»] scaffold0048 (1 HSPs)
scaffold0048 (279-342)||(48853-48916)
[»] scaffold0259 (1 HSPs)
scaffold0259 (91-139)||(18251-18298)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 274 - 488
Target Start/End: Original strand, 15516619 - 15516833
Alignment:
Q  274 gaattgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaacaataacgatagcctttgttgttgcaaccat 373  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15516619 gaattgttgaaggtgaataaagtcgcaaaatgctgaatattaagatttaagttgcgattttaacaacaacaataacgatagcctttgttgttgcaaccat 15516718  T
Q  374 ttcagattgttgaggttctcattcattattaacctgcactatttctaatttatagttacctttactcttgaaactcagattgtatcatagagcaacatag 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15516719 ttcagattgttgaggttctcattcattattaacctgcactatttctaatttatagttacctttactcttgaaactcagattgtatcatagagcaacatag 15516818  T
Q  474 gatgaggagataaaa 488  Q
    |||||||||||||||    
T  15516819 gatgaggagataaaa 15516833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 350 - 490
Target Start/End: Original strand, 15533260 - 15533396
Alignment:
Q  350 gatagcctttgttgttgcaaccatttcagattgttgaggttctcattcattattaacctgcactatttctaatttatagttacctttactcttgaaactc 449  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||  ||||||  | | ||||||||| ||    
T  15533260 gatagcctttgttgttgcaaccatctcagcttgttgaggttctcattcatttttaacctgcactatttctaatt--tagtta--tatgctcttgaaattc 15533355  T
Q  450 agattgtatcatagagcaacataggatgaggagataaaagt 490  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  15533356 agattgtatcatagaacaatataggatgaggagataaaagt 15533396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 15516449 - 15516530
Alignment:
Q  103 ttatagaactgggtcacgggtacaaaccatgtcaatttacaaattcggtcaaatttgacccatataaaaaatggacataatcc 185  Q
    |||||||||||||||||||||||||||||||||||||||| ||   |||||||||||| ||||||||||||||||||||||||    
T  15516449 ttatagaactgggtcacgggtacaaaccatgtcaatttacgaaccgggtcaaatttga-ccatataaaaaatggacataatcc 15516530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 36429912 - 36429849
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||||||| |||||| |||||||    
T  36429912 gttgaaggtgaagaaagtcgcaaaatcctagattataggatttaagttgggattttgacaacaa 36429849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 1404847 - 1404784
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||| ||||||||||||| |||| |||||||| | |||||| |||||||    
T  1404847 gttgaaggtgaagaaagtcacaaaatcctaaattttagaatttaagtcgggattttgacaacaa 1404784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 31238042 - 31238105
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||||| ||||||||||| || ||||||||||||| | |||||| |||||||    
T  31238042 gttgaaggtgaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaa 31238105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 16766774 - 16766728
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagt 325  Q
    |||||||||||||||| ||| |||||||||||| ||| |||||||||    
T  16766774 gttgaaggtgaataaaatcgtaaaatcctaaattttaagatttaagt 16766728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 15623953 - 15623994
Alignment:
Q  354 gcctttgttgttgcaaccatttcagattgttgaggttctcat 395  Q
    |||||||||||||||||||| |||||||||| |||| |||||    
T  15623953 gcctttgttgttgcaaccatctcagattgttcaggtactcat 15623994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 34841620 - 34841588
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaat 311  Q
    |||||||||||||||||||||| ||||||||||    
T  34841620 gttgaaggtgaataaagtcgcagaatcctaaat 34841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 30912477 - 30912540
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  30912477 gttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaa 30912540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 6943525 - 6943588
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||    
T  6943525 gttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 6943588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 7223578 - 7223520
Alignment:
Q  284 aggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||| |||||||||||||||||||| ||||||||||||| | |||||| |||||||    
T  7223578 aggtgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 7223520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 12245369 - 12245307
Alignment:
Q  93 ttttatgtatttatagaactgggtcacgggtacaaaccatgtcaatttacaaattcggtcaaa 155  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||| | ||||| |||||||    
T  12245369 ttttatgtatttatagaactggatcacgggtacaaatcaggtcaattgaaaaattgggtcaaa 12245307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 8545026 - 8545074
Alignment:
Q  275 aattgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaa 323  Q
    |||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  8545026 aattgttgaaagtgagtaaagtcgcaaaatcctaaattttaggatttaa 8545074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 7918446 - 7918509
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||| ||| |||| |||||||| | |||||| |||||||    
T  7918446 gttgaaggtgaaaaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaa 7918509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 15528179 - 15528238
Alignment:
Q  283 aaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||    
T  15528179 aaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 15528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 17250121 - 17250058
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||||| ||||||||||  || ||||||||||||| | ||||||||||||||    
T  17250121 gttgaaggtgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaacaa 17250058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 17543805 - 17543868
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||| ||||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||    
T  17543805 gttgaaagtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgagattttgacaacaa 17543868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 26053362 - 26053424
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||| | |||||| |||||||    
T  26053362 ttgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaa 26053424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 26073415 - 26073477
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||| | |||||| |||||||    
T  26073415 ttgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaa 26073477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 1178989 - 1178952
Alignment:
Q  86 cttggtcttttatgtatttatagaactgggtcacgggt 123  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  1178989 cttggtcttttatgtatttatagaactaggtcacgggt 1178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 4597211 - 4597278
Alignment:
Q  274 gaattgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||| ||| ||| ||||||||||| ||||||||||||| ||||||||||| ||| |||||| |||||||    
T  4597211 gaatcgttaaagatgaataaagtcacaaaatcctaaat-ttaggatttaaattgtgattttgacaacaa 4597278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 5422813 - 5422876
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||||||||| |||||||| | ||| |||| |||||||| | |||||| |||||||    
T  5422813 gttgaaggtgaataaagttgcaaaatcatgaattttagtatttaagtcgggattttgacaacaa 5422876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 10958253 - 10958315
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||| | ||||||||||||||| ||| ||  ||||||||| |||||||| |||||||    
T  10958253 ttgaaggtgagtcaagtcgcaaaatcctgaattttgagatttaagtcgcgattttgacaacaa 10958315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 4841984 - 4842026
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaa 323  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||    
T  4841984 gttgaaggtgaataaagtcgcaaaatcc--aattttaggatttaa 4842026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 7359912 - 7359871
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatt 320  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||    
T  7359912 gttgaaggtgaataaagtcgctaaatcttaaattttaggatt 7359871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 9955100 - 9955163
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  9955100 gttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaa 9955163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 12800646 - 12800709
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||| ||||| ||||||| |||||||||||| ||||||||||||||| |||||| |||||||    
T  12800646 gttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagttgggattttcacaacaa 12800709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 34478830 - 34478898
Alignment:
Q  274 gaattgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||| |||||||||||| |||||| |||||||| |||| ||| ||||||||| | ||||||||||||||    
T  34478830 gaatcgttgaaggtgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaacaa 34478898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 9327280 - 9327343
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||| | |||||||||||| ||||||| |||||||||||||   ||||||||||||||    
T  9327280 gttgaaggtgtagaaagtcgcaaaaccctaaattttaggatttaagtcaggattttaacaacaa 9327343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 23528720 - 23528657
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||| |||| |||||||||||||||| ||| ||| ||||||||||| |||||| |||||||    
T  23528720 gttgaagatgaagaaagtcgcaaaatcctgaattttaagatttaagttgggattttgacaacaa 23528657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 42180130 - 42180193
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||| ||| |||||||||||||||| ||| |||| |||||||||| |||||| |||||||    
T  42180130 gttgaaggggaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttgacaacaa 42180193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 13276331 - 13276401
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaacaataac 349  Q
    ||||||| |||| ||||||||||||||||| || ||||||||||| | | |||||| ||||||| ||||||    
T  13276331 gttgaagatgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaataataac 13276401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 18304877 - 18304939
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||| ||||||||||||| ||  || ||||||||||||||| |||||| |||||||    
T  18304877 ttgaaggtgaagaaagtcgcaaaatactggattttaggatttaagttgggattttgacaacaa 18304939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 19010012 - 19010057
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagt 325  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||||    
T  19010012 ttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagt 19010057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 9128912 - 9128968
Alignment:
Q  286 gtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||| |||||||||| ||||||| | ||||||||||||| | ||||||||||||||    
T  9128912 gtgaagaaagtcgcaagatcctaatttttaggatttaagtcgtgattttaacaacaa 9128968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 21846333 - 21846396
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||||||||||||||||  || ||||||||||| | | |||||| |||||||    
T  21846333 gttgaaggtgaaaaaagtcgcaaaatcctggattttaggatttaactcgggattttgacaacaa 21846396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 25146833 - 25146896
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||||||||||||| || ||| |||||||||||||   |||||| |||||||    
T  25146833 gttgaaggtgaagaaagtcgcaaaattctgaattttaggatttaagtcaggattttgacaacaa 25146896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 30619139 - 30619076
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||| ||||||||||||  || ||||||||||||| | |||||| |||||||    
T  30619139 gttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaagtcgggattttgacaacaa 30619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 9352129 - 9352191
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||| |||||||||||| |||  || ||||||||||||| | |||||| |||||||    
T  9352129 ttgaaggtgaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaacaa 9352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 12513345 - 12513283
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaaca 341  Q
    ||||||| |||| ||||||||||||||||| ||  |||||||||||| | |||||| ||||||    
T  12513345 gttgaagctgaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaaca 12513283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 24117076 - 24117008
Alignment:
Q  274 gaattgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||| |||||||||||||||||| | |||||| ||||| |||| |||||| |||  ||||| |||||||    
T  24117076 gaatcgttgaaggtgaataaagttgtaaaatcttaaattttagaatttaaattggaattttgacaacaa 24117008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 24117285 - 24117253
Alignment:
Q  87 ttggtcttttatgtatttatagaactgggtcac 119  Q
    ||||||||||||||||||||||||| |||||||    
T  24117285 ttggtcttttatgtatttatagaaccgggtcac 24117253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 11326448 - 11326387
Alignment:
Q  281 tgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  11326448 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaa 11326387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 9685309 - 9685372
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||| | |||||| |||||||    
T  9685309 gttgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaa 9685372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 27221482 - 27221419
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||| |||| |||||||||||||||| ||| |||| |||||||||| ||||||||||||||    
T  27221482 gttgaagatgaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttaacaacaa 27221419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 5715355 - 5715291
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| | |||||||||||||||| ||| ||||||||||||| | |||||| |||||||    
T  5715355 ttgttgaaggtgta-aaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 5715291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 22687727 - 22687792
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||| |||| ||||||||||| |||| ||| ||||||||||||| | |||||| |||||||    
T  22687727 ttgttgaagttgaagaaagtcgcaaattcctgaattttaggatttaagtcgggattttgacaacaa 22687792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 30294236 - 30294176
Alignment:
Q  282 gaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||||| || |||||||||  || ||||||||||||||| |||||| |||||||    
T  30294236 gaaggtgaataaaatcacaaaatcctggattttaggatttaagttgggattttgacaacaa 30294176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 44944921 - 44944977
Alignment:
Q  286 gtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||    
T  44944921 gtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 44944977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 5058593 - 5058530
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||| ||||||||| || ||| ||||||||||||| | |||||| |||||||    
T  5058593 gttgaaggtgaagaaaatcgcaaaattctgaattttaggatttaagtcgggattttgacaacaa 5058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 26281374 - 26281437
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||| ||| ||| ||||||||| |  ||||| |||||||    
T  26281374 gttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaa 26281437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 26617541 - 26617587
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagt 325  Q
    |||||||||||| |||||||||||||||| ||| |||||||| ||||    
T  26617541 gttgaaggtgaaaaaagtcgcaaaatcctgaattttaggattaaagt 26617587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 4247422 - 4247357
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||| ||||| |||||  ||||||||| ||| ||||||||||| ||| |||||| |||||||    
T  4247422 ttgttgaaagtgaagaaagttacaaaatcctgaattttaggatttaaattgggattttgacaacaa 4247357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 8346598 - 8346630
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaat 311  Q
    |||||||||||| ||||||||||||||||||||    
T  8346598 gttgaaggtgaagaaagtcgcaaaatcctaaat 8346630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 43234932 - 43234869
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  43234932 gttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagttgggattttgacaacaa 43234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 23172497 - 23172560
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||||| | |||||| |||||||    
T  23172497 gttgaagatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 23172560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 18843779 - 18843715
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaac 343  Q
    |||||||||||| |||||||||||||||| |||  |||||||||||| |  ||||||||||||||    
T  18843779 gttgaaggtgaagaaagtcgcaaaatcctgaattataggatttaagtcggaattttaacaacaac 18843715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 18051595 - 18051658
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||| |||| ||||||||||||||||| || ||||||||||||| | |||||| |||||||    
T  18051595 gttgaagttgaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaa 18051658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 19042454 - 19042516
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaaca 341  Q
    |||||||||||| |||||| ||||||| ||||| |||| |||||||||| |||||| ||||||    
T  19042454 gttgaaggtgaagaaagtcacaaaatcttaaattttagaatttaagttgggattttgacaaca 19042516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 20320988 - 20320926
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaaca 341  Q
    |||||||||||| ||||| |||||||| ||||| |||||||||| |||| |||||| ||||||    
T  20320988 gttgaaggtgaagaaagttgcaaaatcttaaattttaggatttaggttgggattttgacaaca 20320926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 20923782 - 20923719
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||||||||||||| ||  || ||||||||||||| | |||||| |||||||    
T  20923782 gttgaaggtgaagaaagtcgcaaaattctggattttaggatttaagtcgggattttgacaacaa 20923719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 21059220 - 21059283
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||| ||||| ||||||||||||||||| || ||||||||||| | | |||||| |||||||    
T  21059220 gttgaaagtgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaa 21059283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 22645784 - 22645847
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| ||||||||||||| ||  || ||||||||||||| | |||||| |||||||    
T  22645784 gttgaaggtgaagaaagtcgcaaaatactggattttaggatttaagtcgggattttgacaacaa 22645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 38158317 - 38158382
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||| || || ||||||||||||||||| || ||||||||||||| |  ||||| |||||||    
T  38158317 ttgttgaaagtcaagaaagtcgcaaaatcctagattttaggatttaagtcggaattttgacaacaa 38158382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 8011281 - 8011344
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||| ||| ||||||||| ||||| |||||| |||||||    
T  8011281 gttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttgagttgggattttgacaacaa 8011344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 13023631 - 13023568
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaa-tattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||| |||||||    
T  13023631 ttgaaggtgaagaaagtcgcaaaatcctaaatttttaggatttaagttgggattttgacaacaa 13023568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 13551687 - 13551750
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||| | |||||| |||||||    
T  13551687 gttgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaa 13551750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 5362028 - 5362091
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||| |||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||    
T  5362028 gttgaagatgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 5362091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 9770176 - 9770113
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||| |||||||||| || |||| |||||||| | ||||||||||||||    
T  9770176 gttgaaggtgaaaaaagtcacaaaatcctagattttagaatttaagtcgagattttaacaacaa 9770113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 5375728 - 5375666
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaaca 341  Q
    |||||||||||| |||||||||||||| ||||| |||| ||||| |||| |||||| ||||||    
T  5375728 gttgaaggtgaagaaagtcgcaaaatcttaaattttagaatttaggttgggattttgacaaca 5375666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 9149801 - 9149855
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgatttt 334  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||| | ||||||    
T  9149801 ttgaaggtagataaagtcgcaaaatcctaaattttaggatttaagtcgggatttt 9149855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 7044791 - 7044727
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaac 343  Q
    |||||||||||||||||| |||||||| |  || ||||||||||||| | |||||| ||||||||    
T  7044791 gttgaaggtgaataaagttgcaaaatcatggattttaggatttaagtcgggattttgacaacaac 7044727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 4156823 - 4156764
Alignment:
Q  283 aaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||||||  |||||||||||| ||| ||||||||| | |||||| |||||||    
T  4156823 aaggtgaataaagtcataaaatcctaaattttaagatttaagtcgggattttgacaacaa 4156764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 24719581 - 24719518
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||||||||||||||||||| | ||| |||| | |||||| | |||||| |||||||    
T  24719581 gttgaaggtgaataaagtcgcaaaatcttgaattttagaaattaagtcgagattttgacaacaa 24719518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 6347129 - 6347177
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttg 327  Q
    ||||||||| |||||||| ||||||||||  || |||||||||||||||    
T  6347129 gttgaaggtaaataaagttgcaaaatcctggattttaggatttaagttg 6347177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 28745834 - 28745771
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| | | |||||| |||||||    
T  28745834 gttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggattttgacaacaa 28745771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 3449356 - 3449419
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||| || |||||||||||||||| ||| ||||||||||||| | |||||| |||||||    
T  3449356 gttgaaggtaaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 3449419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 29067348 - 29067285
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||| ||| |||| |||||||| | |||||| |||||||    
T  29067348 gttgaaggtgaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaa 29067285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 17796334 - 17796284
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttg 327  Q
    ||||||||||||||||||||| |||||||||| || ||| |||||||||||    
T  17796334 ttgttgaaggtgaataaagtcacaaaatcctagattttatgatttaagttg 17796284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 19104774 - 19104724
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttg 327  Q
    ||||||||||||||||||||| |||||||||| || ||| |||||||||||    
T  19104774 ttgttgaaggtgaataaagtcacaaaatcctagattttatgatttaagttg 19104724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 17796552 - 17796506
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaa 323  Q
    |||||||||||||||||||||| ||||||||| || ||| |||||||    
T  17796552 ttgttgaaggtgaataaagtcgaaaaatcctagattttatgatttaa 17796506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 19104992 - 19104946
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaa 323  Q
    |||||||||||||||||||||| ||||||||| || ||| |||||||    
T  19104992 ttgttgaaggtgaataaagtcgaaaaatcctagattttatgatttaa 19104946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 17796443 - 17796378
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||| |||||||||||| ||||||||| || ||| ||||||||| |  ||||| |||||||    
T  17796443 ttgttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaa 17796378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 19104883 - 19104818
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||| |||||||||||| ||||||||| || ||| ||||||||| |  ||||| |||||||    
T  19104883 ttgttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaa 19104818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 22494846 - 22494894
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttg 327  Q
    |||||||||||| ||||||||||||||  | || |||||||||||||||    
T  22494846 gttgaaggtgaaaaaagtcgcaaaatctcagattttaggatttaagttg 22494894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 27676417 - 27676357
Alignment:
Q  282 gaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||||||||||||||||||||  || ||| |||||||||   |||||| |||||||    
T  27676417 gaaggtgaataaagtcgcaaaatcctgcattttacgatttaagtcaggattttgacaacaa 27676357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 15294734 - 15294672
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaaca 341  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||| | |||||| ||||||    
T  15294734 gttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15294672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 15475103 - 15475041
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaaca 341  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||| | |||||| ||||||    
T  15475103 gttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15475041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 17788372 - 17788434
Alignment:
Q  280 ttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||| ||||||| |||||||||| || |||  ||||||||||||||||| |||||||    
T  17788372 ttgaaggtgagtaaagtctcaaaatcctagattttaaaatttaagttgcgattttgacaacaa 17788434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 5922113 - 5922050
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||| |||||||||  || ||||||||||||| | |||||| |||||||    
T  5922113 gttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcgggattttgacaacaa 5922050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 17647057 - 17646994
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||||| ||| ||| ||||||||| |  ||||| |||||||    
T  17647057 gttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaa 17646994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 30240546 - 30240593
Alignment:
Q  127 aaccatgtcaatttacaaattcggtcaaatttgacccatataaaaaat 174  Q
    |||||||||||||||||||   ||||||| ||||||||||||||||||    
T  30240546 aaccatgtcaatttacaaaccgggtcaaaattgacccatataaaaaat 30240593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 22910267 - 22910313
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagt 325  Q
    |||||| ||||| ||||||| |||||||||||| |||||||||||||    
T  22910267 gttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagt 22910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 27836527 - 27836576
Alignment:
Q  277 ttgttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagtt 326  Q
    ||||||||||||||||||  ||||||||||| ||| ||||||| ||||||    
T  27836527 ttgttgaaggtgaataaaaccgcaaaatcctgaattttaggatctaagtt 27836576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 26575456 - 26575500
Alignment:
Q  86 cttggtcttttatgtatttatagaactgggtcacgggtacaaacc 130  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  26575456 cttggtattttatgtatttatagaaccgggtcactgatacaaacc 26575500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 30240697 - 30240749
Alignment:
Q  282 gaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgatttt 334  Q
    ||||||||||||||||| ||||||||| || |||| |||||| | ||||||||    
T  30240697 gaaggtgaataaagtcgaaaaatcctatattttagaatttaaatcgcgatttt 30240749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 7520 - 7583
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    ||||||||| || |||||||||||||||| ||| |||| |||||||| | |||| |||||||||    
T  7520 gttgaaggtaaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattctaacaacaa 7583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 8507 - 8444
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||| |||||||||||||| |  || ||||||||||||| | |||||| |||||||    
T  8507 gttgaaggtgaagaaagtcgcaaaatcgtggattttaggatttaagtagggattttgacaacaa 8444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 48853 - 48916
Alignment:
Q  279 gttgaaggtgaataaagtcgcaaaatcctaaatattaggatttaagttgcgattttaacaacaa 342  Q
    |||||||||||||||||| ||||||| ||| || ||||||||||||| |  ||||| |||||||    
T  48853 gttgaaggtgaataaagttgcaaaattctagattttaggatttaagtcggaattttcacaacaa 48916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 18298 - 18251
Alignment:
Q  91 tcttttatgtatttatagaactgggtcacgggtacaaaccatgtcaatt 139  Q
    |||||||||||||||||||||  ||||||| |||||||||| |||||||    
T  18298 tcttttatgtatttatagaac-cggtcacgagtacaaaccaagtcaatt 18251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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