View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_high_2 (Length: 455)
Name: NF3945_high_2
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 241 - 454
Target Start/End: Original strand, 34329143 - 34329355
Alignment:
| Q |
241 |
ctttgcatgtatagtcttatggttggtgacgatattcaggatgcttgtttggttcaatgatttaatttttcttactgcaatctcaccaacttatattatc |
340 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |
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| T |
34329143 |
ctttgcatgtatagtcttatggttggtgaggatattcaggatgcttgtttggttcaataatttaatttt-cttactacaatctcaccaacttatattatc |
34329241 |
T |
|
| Q |
341 |
aacgtttttgtgattatttttcatagtattataacttgttatgtttattattccacnnnnnnngcatgtttctgtcagtaacgtatttaatgattttagc |
440 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
34329242 |
aacgtttttgtgattatttttcttagtattataacttgttatgtttattattccactttttttgcatgtttctgtcagtaacgtatttaatgatcttagc |
34329341 |
T |
|
| Q |
441 |
ctatgcttctcctc |
454 |
Q |
| |
|
||||| || ||||| |
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| T |
34329342 |
ctatgtttttcctc |
34329355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34328890 - 34329005
Alignment:
| Q |
1 |
agatctcccaaattcgtcatggcttccacactccgctctggttctaagtcagtaatcccccttttcagatcccttatccccactttttcaattcctcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |
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| T |
34328890 |
agatctcccaaattcgtcatggcttccacactccgctctggttccaagtcagtaatcccctttttcagatcccttatccccac-ttttcaattcttcgtg |
34328988 |
T |
|
| Q |
101 |
catttcatttcatcttc |
117 |
Q |
| |
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||||||||||||||||| |
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| T |
34328989 |
catttcatttcatcttc |
34329005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 34329087 - 34329122
Alignment:
| Q |
187 |
aaatgattgttggggtggttcgattgcattcaagtt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
34329087 |
aaatgattgttggggtggttcgattgcattcaagtt |
34329122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 445
Target Start/End: Complemental strand, 9670074 - 9669878
Alignment:
| Q |
241 |
ctttgcatgtatagtcttatggttggtgacgatattcaggatgcttgtttggttcaatgatttaatttttcttactgcaatctcaccaacttatatt--- |
337 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
9670074 |
ctttgcatgtatagtcttctggttggtgaggatattcaggatgcttgtttggttcaataatttaatttt-----------tctcaccaacttatattcac |
9669986 |
T |
|
| Q |
338 |
--atcaacgtt-tttgtgattatttttcatagtattataacttgttatgtttattattccacnnnnnnngcatgtttctgtcagtaacgtatttaatgat |
434 |
Q |
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|
||||||| ||| ||||||||||||| |||||| |||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
9669985 |
aacacaacgttctttctgattatttttca---tattatcactttttatggttactattccactttttttgcatgtttccgtcagtaacgtatttaatgat |
9669889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9670327 - 9670218
Alignment:
| Q |
1 |
agatctcccaaattcgtcatggcttccacactccgctctggttctaagtcagtaatcccccttttcagatcccttatccccactttttcaattcctcgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||||||||||| ||| ||||||||| ||| | |
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| T |
9670327 |
agatctcccaaattcgtcatggcttccaccctccgttctggttccaagtcagtaat-ccctttttcagatccctt------actatttcaattcatcgcg |
9670235 |
T |
|
| Q |
101 |
catttcatttcatcttc |
117 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
9670234 |
catttcatttcatcttc |
9670218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 9670123 - 9670088
Alignment:
| Q |
187 |
aaatgattgttggggtggttcgattgcattcaagtt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
9670123 |
aaatgattgttggggtggttcgattgcattcaagtt |
9670088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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