View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_high_7 (Length: 338)
Name: NF3945_high_7
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 36477153 - 36476834
Alignment:
| Q |
1 |
atgggtttccaccattttcatggttttaatttgactatgcaagttagaatattaaaacttgttaacttacactcgctcattttttagtagacttgttaac |
100 |
Q |
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| T |
36477153 |
atgggtttccaccattttcatggttttaatttgactatgcaagttagaatattaaaacttgttaacttacactcgctcattttttagtagatttgttaac |
36477054 |
T |
|
| Q |
101 |
aagatataagtaaaagtttgtaaaataaactgtaaggtgtaaattgcaaatatacacttactaatttaattattttattattaattgagttaataagttc |
200 |
Q |
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| T |
36477053 |
aagatataagtaaaagtttgtaaaataaactgtaaggtgtaaattgcaaatatacacttactaatataattattttattattaattgagttaataagttc |
36476954 |
T |
|
| Q |
201 |
acacactgcttagggtcatgatccgcctcttatgctatggtatggtatcaaaaaatttcaaagatagatattacccaaacaaggggttccttgaggctca |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36476953 |
acacactgcttagggtcctgatccgcctcttatgctatggtatggcatcaaaaaatttcaaagatagatattacccaaacaaggggttccttgaggctca |
36476854 |
T |
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| Q |
301 |
gttcaaccatagtccaagtt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
36476853 |
gttcaaccatagtccaagtt |
36476834 |
T |
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