View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_low_12 (Length: 274)
Name: NF3945_low_12
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 9756273 - 9756034
Alignment:
| Q |
19 |
aacaatgaggaaaatttggactttggtgaagatatcttattttctgcaaataccaagagaaaacgaaattctaatgtcgttatgagtgagtctgaaagtg |
118 |
Q |
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| T |
9756273 |
aacaatgaggaaaatttggactttggtgaagatatcttattttttgcaaataccaagagaaaacgaaattctaacgtcgttatgagtgagtctgaaagtg |
9756174 |
T |
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| Q |
119 |
atcnnnnnnnnnnnnnnnnnnnnnacaactctctaactactgctaatttagaggttgacaaggttgttgacactcaaaggccaaggcgccgtctacagac |
218 |
Q |
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| T |
9756173 |
atc---atgatgatgatgatatcaacaactctctaactactgctaatttagaggttgacaaggttgttgacactcaaatgccaaagcaccgcttactgac |
9756077 |
T |
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| Q |
219 |
tctaaggaaactcgaaagcaaaagtcagaatgatgaaatatct |
261 |
Q |
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| T |
9756076 |
tctgaggaaacttggaagcaaaagttaggatgatgaaatatct |
9756034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 9829608 - 9829490
Alignment:
| Q |
143 |
acaactctctaactactgctaatttagaggttgacaaggttgttgacactcaaaggccaaggcgccgtctacagactctaaggaaactcgaaagcaaaag |
242 |
Q |
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| T |
9829608 |
acaactctctaactactgctaatttagaggttgacaaggttgttgacactcaaaggccaaggcgccgtctacagactctaaggaaactcgaaagcaaaag |
9829509 |
T |
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| Q |
243 |
tcagaatgatgaaatatct |
261 |
Q |
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| T |
9829508 |
tcagaatgatgaaatatct |
9829490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 9829743 - 9829633
Alignment:
| Q |
11 |
attctcaaaacaatgaggaaaatttggactttggtgaagatatcttattttctgcaaataccaagagaaaacgaaattctaatgtcgttatgagtgagtc |
110 |
Q |
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| T |
9829743 |
attctcaaaacaatgaggaaaatttggactttggtgaagatatcttattttctgcaaataccaagagaaaacgaaattctaatgtcgttatgagtgagtc |
9829644 |
T |
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| Q |
111 |
tgaaagtgatc |
121 |
Q |
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| T |
9829643 |
tgaaagtgatc |
9829633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 9708896 - 9708674
Alignment:
| Q |
16 |
caaaacaatgaggaaaatttggactttggtgaagatatcttattttctgcaaataccaagagaaaacgaaattctaatgtcgttatgagtgagtctgaaa |
115 |
Q |
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| T |
9708896 |
caaaacaataaagaaaagttggactttggtgaagatatcttatttactgcaaataccaagaggaaacggccttgcaatgtcgttatgagcgagtcagaaa |
9708797 |
T |
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| Q |
116 |
gtgatcnnnnnnnnnnnnnnnnnnnnnacaactctctaactactgctaatttagaggttgacaaggttgttgacactcaaaggccaaggcgccgtctaca |
215 |
Q |
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|||||| ||||||| |||||| |||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |
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| T |
9708796 |
gtgatcaggatgatgatggtatgag---caactctgtaactagtgctaatttagaggttgacaaggtcaccgacagtcaaatgccaaggcgtcgtctaca |
9708700 |
T |
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| Q |
216 |
gactctaaggaaactcgaaagcaaaa |
241 |
Q |
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||||||||||||||| | |||||||| |
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| T |
9708699 |
gactctaaggaaacttgtaagcaaaa |
9708674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 9814270 - 9814225
Alignment:
| Q |
145 |
aactctctaactactgctaatttagaggttgacaaggttgttgaca |
190 |
Q |
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| T |
9814270 |
aactctctaactactgctactttagaggatgacaaggtcgttgaca |
9814225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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