View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_low_16 (Length: 208)
Name: NF3945_low_16
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 28393996 - 28393818
Alignment:
| Q |
15 |
cagagagttgctttatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatgg |
114 |
Q |
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| T |
28393996 |
cagagagttgcattatcattctcacttgaagcagtgttaaggtagacaaatacaggtccaaaaacctttttataggtctctccttcttgaaatgccatgg |
28393897 |
T |
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| Q |
115 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaaacaaaaacaaaatatgtaaatcaaatattataaacttg |
193 |
Q |
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| T |
28393896 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaaacaaaaacaaaagatgtaaatcaaatattataaacttg |
28393818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 28385651 - 28385506
Alignment:
| Q |
15 |
cagagagttgctttatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatgg |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||| |
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| T |
28385651 |
cagagagttgtattatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttataagtttcaccttcttcaaatgccatgg |
28385552 |
T |
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| Q |
115 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaaacaaa |
160 |
Q |
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| T |
28385551 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaagcaaa |
28385506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 28410453 - 28410608
Alignment:
| Q |
15 |
cagagagttgctttatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatgg |
114 |
Q |
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||||||||||| |||||||||| |||||| ||||||||||||| ||||| | ||| ||||| ||||||||||| |||| ||||||| |||| |||||| |
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| T |
28410453 |
cagagagttgcattatcattctcacttgaagcagtgttaaggtagacaaatataggcccaaacacctttttataagtctccccttcttcaaattccatgg |
28410552 |
T |
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| Q |
115 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaaacaaaaacaaaatat |
170 |
Q |
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|||| ||||||||||||||||| | ||||||||||||| |||||||||||||| |
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| T |
28410553 |
ttacatcctttccagcatagtggggactcacaaacatctttgcaaaaacaaaatat |
28410608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 13368741 - 13368643
Alignment:
| Q |
56 |
gtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatggttacttcctttccagcatagtgtgtgctcacaaacatcta |
154 |
Q |
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||||||||| | ||| || ||||||||||||| ||||||||| ||||||| |||| ||| || || ||||||||||| ||||| ||||||||||| |
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| T |
13368741 |
gtaaacaaagataggcccgaaaacctttttatgagtctctccttgttgaaattggatggctacgtctttaccagcatagtgggtgcttacaaacatcta |
13368643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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