View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_low_17 (Length: 207)
Name: NF3945_low_17
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 34329323 - 34329463
Alignment:
| Q |
1 |
cgtatttaatgattttagcctatgtttttcctccagtatcttctactaatatattcttaacaagtagtacaccttagttttgnnnnnnngattgtattct |
100 |
Q |
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| T |
34329323 |
cgtatttaatgatcttagcctatgtttttcctccagtatcttctactaatat--tcttaacaagtagtacaccttagttttgtttttttgattgtattct |
34329420 |
T |
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| Q |
101 |
atggtataaacgcatattccctaggtggcttcactataaattc |
143 |
Q |
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| T |
34329421 |
atggtataaacgcatattccctaggtggcttcactataaattc |
34329463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 9669807 - 9669711
Alignment:
| Q |
91 |
attgtattctatggtataaacgcatattccctaggtggcttcactataaattccatttcggaannnnnnnatttcattcctattcaacgtgaatctct |
188 |
Q |
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| T |
9669807 |
attgtattctatggtataaacgtatattccctaggtgacttcaccataaatacaatttgggaa-ttttttatttcattcctattcaacatgaatctct |
9669711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9669901 - 9669829
Alignment:
| Q |
1 |
cgtatttaatgattttagcctatgtttttcctccagtatcttctactaatatattcttaacaagtagtacaccttagttttg |
82 |
Q |
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| T |
9669901 |
cgtatttaatgattttaccctatgttttt-ctctagtatcttcta-----atattcttaaca---agtacaccttagttttg |
9669829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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