View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_low_18 (Length: 202)
Name: NF3945_low_18
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 9030810 - 9030997
Alignment:
| Q |
1 |
tagagaatcacgtgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9030810 |
tagagaatcacgtgaaaattgcactataaatggatacaatattccagccaggacaatattgtatgtgaatgcttgggctattcagagagaccataatgtt |
9030909 |
T |
|
| Q |
101 |
tgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttg |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9030910 |
tgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttg |
9030997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 9000313 - 9000127
Alignment:
| Q |
2 |
agagaatcacgtgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgttt |
101 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9000313 |
agagaatcacgtgaaaattgcactataagtggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccctaatgttt |
9000214 |
T |
|
| Q |
102 |
gggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttg |
188 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9000213 |
ggaaaaatccagaagaattttatcctgaaagattcttagaaagttctataaattttaatggacaagattttgaactaataccctttg |
9000127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 8954972 - 8955147
Alignment:
| Q |
13 |
tgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgca |
112 |
Q |
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||||||||| || |||| ||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||| | || ||||| |||| || |
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| T |
8954972 |
tgaaaattgtaccataagtggatacaacattcctgcaaagacaatattatatgtaaatgcttgggctattcagagagatccagatatttggataaaccca |
8955071 |
T |
|
| Q |
113 |
gaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttg |
188 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
8955072 |
gaagaattttatcctgagagattcttagaaagttctataaattttattggacaagactttgaactaataccctttg |
8955147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 8979297 - 8979483
Alignment:
| Q |
2 |
agagaatcacgtgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgttt |
101 |
Q |
| |
|
||||||||| | |||| |||| ||| ||||| ||||||||||||||| | |||||||||||||| || | ||||||||||| ||||| | |||| || |
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| T |
8979297 |
agagaatcaagggaaacatgcattatcaatggctacaatattccagcccaaacaatattgtatgtaaacgtctgggctattcaaagagatcctaatactt |
8979396 |
T |
|
| Q |
102 |
gggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttg |
188 |
Q |
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|| |||| |||||||||||||||| || |||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
8979397 |
ggaaaaatccagaagaattttatcccgagagattcatagaaagttctataaattttattggacatgatttcgaactaataccctttg |
8979483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 8900663 - 8900539
Alignment:
| Q |
64 |
tgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactgga |
163 |
Q |
| |
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||||||||||||||||||||| | ||||| |||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
8900663 |
tgtgaatgcttgggctattcatacagacccagatgtttggaaaaacccagaagagttttatcctgaaagatttttagaaagttctataaatttttatgga |
8900564 |
T |
|
| Q |
164 |
caagattttgaactaataccctttg |
188 |
Q |
| |
|
||||||||||||||||| ||||||| |
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| T |
8900563 |
caagattttgaactaattccctttg |
8900539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 8914619 - 8914452
Alignment:
| Q |
13 |
tgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgca |
112 |
Q |
| |
|
|||||| |||||||||||||| | | | ||||| || ||| | ||| ||| ||||||||||||||||||||| | |||| ||||||||| ||||| || |
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| T |
8914619 |
tgaaaaatgcactataaatggcttccaaattcccgcaaaggcgatagtgtttgtgaatgcttgggctattcatacagactcaaatgtttggaaaaaccca |
8914520 |
T |
|
| Q |
113 |
gaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaat |
180 |
Q |
| |
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|||||||||||||| || ||||| |||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
8914519 |
gaagaattttatccagagagatttttagaaagttctttaaattttcatggacaagattttgaactaat |
8914452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 8966403 - 8966230
Alignment:
| Q |
2 |
agagaatcacgtgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgttt |
101 |
Q |
| |
|
||||||||| | ||||| |||| ||||| ||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||| | | || |
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|
| T |
8966403 |
agagaatcaagagaaaagtgcattataagtggttacaagattccagccaacacaatagtgtatgtgaatgcttgggctattcaaagagacccaagtaatt |
8966304 |
T |
|
| Q |
102 |
gggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaa |
175 |
Q |
| |
|
|| |||| ||||||| |||||||| || |||||||| ||| |||| | |||||| |||||||||||||||| |
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| T |
8966303 |
ggaaaaatccagaagagttttatcccgagagattcttggaatgttcgacgaattttcttggacaagattttgaa |
8966230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 8929515 - 8929374
Alignment:
| Q |
39 |
atattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattctt |
138 |
Q |
| |
|
||||||| || || |||||| | ||||||||||||||| ||||||| |||||| | | ||||| || | | ||||| ||||||||||| |||||||| |
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| T |
8929515 |
atattcctgcaaaaacaatagtatatgtgaatgcttggtctattcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattctt |
8929416 |
T |
|
| Q |
139 |
agaaagttctataaattttactggacaagattttgaactaat |
180 |
Q |
| |
|
||| ||||||||||||||| |||||| ||||||||| |||| |
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| T |
8929415 |
agagagttctataaattttcttggacatgattttgaattaat |
8929374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 9400404 - 9400236
Alignment:
| Q |
20 |
tgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaat |
119 |
Q |
| |
|
||||||||| ||| ||| | |||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||| || | ||||||| | |
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| T |
9400404 |
tgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagt |
9400305 |
T |
|
| Q |
120 |
tttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttg |
188 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| ||||||||| |||||| | || ||||||| |
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|
| T |
9400304 |
tttatccagagagattcttagaaagttctataaattttcttggacaagactttgaatttattccctttg |
9400236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 20074122 - 20073998
Alignment:
| Q |
64 |
tgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactgga |
163 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||| |||| ||||||||||||||||||| ||||| ||||||||||| ||||||||| ||| |
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| T |
20074122 |
tgtgaatgcttgggctattcatacagaccctaatgtttggaaaaatccagaagaattttatcctgagagatttttagaaagttcgataaattttcacgga |
20074023 |
T |
|
| Q |
164 |
caagattttgaactaataccctttg |
188 |
Q |
| |
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||||||||||||||||| ||||||| |
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|
| T |
20074022 |
caagattttgaactaattccctttg |
20073998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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