View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3945_low_3 (Length: 445)
Name: NF3945_low_3
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 32597606 - 32597333
Alignment:
| Q |
18 |
cttagatactgaccaaaataattgctaaatagctacacgtttgagtcatgatttgcagattcccacatttgcatttccttataagctctaatatcttctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32597606 |
cttagatactgaccaaaataattgctaaatagctacacgtttgagtcatgatatgcagattcccacatttgcatttccttataagctctaatatcttctt |
32597507 |
T |
|
| Q |
118 |
cttttaattagcaatgtaaaatcaacgcaaatcaggggttttatttgttggcattttttatacataatgacattgtctcacaaatttaaggaccaaaatg |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32597506 |
cttttaattagcaatgtaaaatcg----------ggggttttatttgttggcattttttatacataatgacattgtctcacaaatttaaggaccaaaatg |
32597417 |
T |
|
| Q |
218 |
tttgtttactccaatactaataatatatgtactcagcggatcgttcaaaacatagtggggggaac--atcttgattttgctaga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
32597416 |
gttgtttactccaatactaataatatatgtactcagcggatcgttcaaaacatagtggggggaacatatcttgattttggtaga |
32597333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 300 - 434
Target Start/End: Complemental strand, 32597297 - 32597156
Alignment:
| Q |
300 |
gctggcagcaaaaatgatagtattcctgcttgttttatacttgcagaattgcaacaaagcctcacaaaaaccaaattaaccgcagaaaagacggaccca- |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32597297 |
gctggcagcaaaaatgatagtattcctgcttgttttatacttgcagaattgcaacaaagcctcacaaaaaccaaattaaccgcagaaaagacggacccaa |
32597198 |
T |
|
| Q |
399 |
------acatagcaatgatttcactatagaatggatagaata |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
32597197 |
acaaccacatagcaatgatttcactatagaatggatagaata |
32597156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 32577449 - 32577320
Alignment:
| Q |
116 |
ttcttttaattagcaatgtaaaatcaacgcaaatcaggggttttatttgttggcattttttatacat--aatgac----attgtctcacaaatttaagga |
209 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||| ||| || || |||||| ||||||||| |
|
|
| T |
32577449 |
ttcttttaattagcaatgtaaaatcaatgctgatcaggtgttttatttgttggaattttttatacattcaataactagaatgacctcacacatttaagga |
32577350 |
T |
|
| Q |
210 |
ccaaaatgtttgtttactccaatactaata |
239 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |
|
|
| T |
32577349 |
ccaaaatggttgtttaatccaatactaata |
32577320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 32613893 - 32613843
Alignment:
| Q |
132 |
tgtaaaatcaacgcaaatcaggggttttatttgttggcattttttatacat |
182 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
32613893 |
tgtaaaatcaatgcagatcagaggttttattttttggaattttttatacat |
32613843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University