View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_low_4 (Length: 379)
Name: NF3945_low_4
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 6634011 - 6633652
Alignment:
| Q |
19 |
ctgctggtactgaagaagagaaaaaattggccgaagaaaatgaaaaaggtgtgcataataaaccaatagagttttcttgagataaattaggactatttac |
118 |
Q |
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| T |
6634011 |
ctgctgatactgaagaagagaaaaaattggccgaagaaaatgaaaaaagtgtgcataataaaccaatagagttttcttgagataaattaggattatttac |
6633912 |
T |
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| Q |
119 |
nnnnnnnnnnnnnngtgcatcatgcatggaactttcttcaaagttgtcatgtatcatatgaactttgattatgaatattaatttggttttgtatgtgtgc |
218 |
Q |
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| T |
6633911 |
ttttttttttttttgtgcatcatgcatggaactttcttcaaagttgtcatgtatcatatgaactttgattatgaatattaatttggttttgtatgtgtgc |
6633812 |
T |
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| Q |
219 |
agaggatgtggttgcacaggaagagacttcggctaaggaagaagttgtcgaaaacacaaatgtttcagcctctgaagctgaagctgaagctggaggtgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6633811 |
agaggatgtggttgcacaggaagagacttcggctaaggaagaagttgtcgaaaacacaaatgtttcagcctctgaagctgaagctgaagctggaggtgaa |
6633712 |
T |
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| Q |
319 |
aataattaaggtgatttgaaaactggggagaggaagtatatatagacatgtctgtgctgc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6633711 |
aataattaaggtgatttgaaaactggggagaggaagtatatatagacatgtttgtgctgc |
6633652 |
T |
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