View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3945_low_6 (Length: 358)
Name: NF3945_low_6
Description: NF3945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3945_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 195 - 346
Target Start/End: Original strand, 47254463 - 47254614
Alignment:
| Q |
195 |
ttacctccattgtgcgaagatagttggagatatcagatgcataaggctcaaaaatctcttcataatcagattttgcattgattttgctgaaatctggttt |
294 |
Q |
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| T |
47254463 |
ttacctccattgtgcgaagatagttggagatatcagatgcataagactcaaaaatctcttcataatcagattttgcattgattttgctgaaatctggttt |
47254562 |
T |
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| Q |
295 |
atcaaaattgaaaccataaaccaaacggacagcatcagatttctttggccta |
346 |
Q |
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| T |
47254563 |
atcaaaattgaaaccataaaccaaacggacagcatcagatttctttggccta |
47254614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 47254287 - 47254412
Alignment:
| Q |
18 |
acctcaaccaaccaatcaaccagtatccctctcatattagcagtgacacctctttgaactttctcaatataaccaatcattggtcttctctttttctgaa |
117 |
Q |
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| T |
47254287 |
acctcaaccaaccaatcaaccagtatccctctcatattagcagtaacacctctttgaactttctcaatataaccaatcattggtcttctctttttctgaa |
47254386 |
T |
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| Q |
118 |
cctgagaaacaatcaaaccaataatt |
143 |
Q |
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| T |
47254387 |
cctgagaaacaatcaaaccaaaaatt |
47254412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 47243030 - 47243126
Alignment:
| Q |
18 |
acctcaaccaaccaatcaaccagtatccctctcatattagcagtgacacctctttgaactttctcaatataaccaatcattggtcttctctttttct |
114 |
Q |
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| T |
47243030 |
acctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcctctttgaacattctccatataaccaaacattggtcttctctttttct |
47243126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 47249907 - 47249974
Alignment:
| Q |
66 |
cctctttgaactttctcaatataaccaatcattggtcttctctttttctgaacctgagaaacaatcaa |
133 |
Q |
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| T |
47249907 |
cctctctgaacattctcaagataaccaaccattggtcttctctttttctgcatctgataaacattcaa |
47249974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 47250060 - 47250107
Alignment:
| Q |
195 |
ttacctccattgtgcgaagatagttggagatatcagatgcataaggct |
242 |
Q |
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| T |
47250060 |
ttacctccattgtgcgaagataatcagagatatcagatacataaggct |
47250107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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