View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3946_high_1 (Length: 390)
Name: NF3946_high_1
Description: NF3946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3946_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 42025865 - 42026226
Alignment:
| Q |
18 |
ctaaccaaataagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgt |
117 |
Q |
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| T |
42025865 |
ctaaccaaacaagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgt |
42025964 |
T |
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| Q |
118 |
ggttggaaatgcacaagatctttatgtggcatctctagccaaagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaa |
217 |
Q |
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|||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025965 |
agttggaaatgcacaaggtctttatgtggcatct--agccagagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaa |
42026062 |
T |
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| Q |
218 |
atggaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaatgtttaggatggccactgg |
317 |
Q |
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| T |
42026063 |
atggaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaaagtttaggatggccactgg |
42026162 |
T |
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| Q |
318 |
ttttgctcagattagggctcattttcttaatgctacaactggtgatgggatcattgagtataat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42026163 |
ttttgctcagattagggctcattttcttaatgctacaactggtgatgggatcgttgagtataat |
42026226 |
T |
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