View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3946_high_10 (Length: 243)
Name: NF3946_high_10
Description: NF3946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3946_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34748448 - 34748674
Alignment:
| Q |
1 |
gacaaaatgatagaaacgtccaagaagacagatattcaaggaagaataataaacgtttcttccgtcatacatagctgggtgaagagacatggtttttgtt |
100 |
Q |
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| T |
34748448 |
gacaaaatgatagaaacgtccaagaagacagatattcaaggaagaataataaacgtttcttctgtcatacatagctgggtgaagagacatggtttttgtt |
34748547 |
T |
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| Q |
101 |
tcaaagatatactcaatggaaaaaagtacaagtactttcttatttgtaaaagtatgaacaatttcaattacactaaatttaaatactcaatggtttttgc |
200 |
Q |
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| T |
34748548 |
tcaaagatatactcaatggaaaaaagtacaagtactttcttatttgttaaagtatgaacaatttcaattacactaaatttaaatactcaatggtttttgc |
34748647 |
T |
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| Q |
201 |
agctataatggaacacgtgcttatgct |
227 |
Q |
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| T |
34748648 |
agctataatggaacacgtgcttatgct |
34748674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 43691378 - 43691474
Alignment:
| Q |
34 |
attcaaggaagaataataaacgtttcttccgtcatacatagctgggtgaagagacatggtttttgtttcaaagatatactcaatggaaaaaagtaca |
130 |
Q |
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|||||||||||||||||||| ||||||| || || |||||||||||||| ||| | | |||||||| ||||| || |||| |||||||||||||| |
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| T |
43691378 |
attcaaggaagaataataaatatttcttcagtaattcatagctgggtgaaaagaagttgcttttgttttaaagacatgctcactggaaaaaagtaca |
43691474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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